View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_low_5 (Length: 365)
Name: NF2571_low_5
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 36192855 - 36193179
Alignment:
| Q |
1 |
tccatgacttcatctgatgtctcagtcttcgaaacaagattgcagataatagtgaagatggactctacatctggtataacaaataacagatattgttaac |
100 |
Q |
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| T |
36192855 |
tccatgacttcatctggattctcagtcttcgtaacaagattgcagataatagtgaagatggactctacatctggtataacaaataacagacattgtaaac |
36192954 |
T |
|
| Q |
101 |
actgtcacagtctgcccaaaagttcatcactcatagtatcacgccaatcaattatctgtgaaatatcaaattgggttcctaacaagaaagtgaagaacgc |
200 |
Q |
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| T |
36192955 |
acagtcacagtctgcccaaaaattcatcactcataatatcatgccaatgaattatctgtgaaacatcaaattgggttcctcactggaaactgaaaaacgc |
36193054 |
T |
|
| Q |
201 |
tctacagaataaaagccacagatacaacatcattaagcagcaaaacaactgaggaaatatcacacaacatgttatcataaatgctaaattcaaccgaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| || |
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| T |
36193055 |
tctacagaataaaagccacagatacaacatcattaagcagtaaaacaactgaggaaatatcacacagcatgttatcacaaatgctaaatttaaccgacct |
36193154 |
T |
|
| Q |
301 |
atcagaaatggataataaattatgg |
325 |
Q |
| |
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|||| || ||||||||||||||||| |
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| T |
36193155 |
atcataactggataataaattatgg |
36193179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 5054637 - 5054323
Alignment:
| Q |
1 |
tccatgacttcatctgatgtctcagtcttcgaaacaagattgcagataatagtgaagatggactctacatctggtataacaaataacagatattgttaac |
100 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5054637 |
tccatgacttcatctggattctcagtcttcgtaacaagattgcagacaatagtgaagatggactctacatctggtataacaaataacagatattgtaaac |
5054538 |
T |
|
| Q |
101 |
actgtcacagtctgcccaaaagttcatcactcatagtatcacgccaatcaattatctgtgaaatatcaaattgggttcctaacaagaaagtgaagaacgc |
200 |
Q |
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| |||||| ||||||||||| |||||||||| || || || |||||||||||||||||| || |||||||||| |||||||| || ||||||| ||||| |
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| T |
5054537 |
a--gtcacattctgcccaaaatttcatcactcgtattaccatgccaatcaattatctgtggaacatcaaattggattcctaactag-aagtgaaaaacgc |
5054441 |
T |
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| Q |
201 |
tctacagaataaaagccacagatacaacatcattaagcagcaaaacaactgaggaaatatcacacaacatgttatcataaatgctaaattcaaccgaact |
300 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||| ||||||| ||| |||||| |||| | |||||||||||||||||||||||||| |||| |
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| T |
5054440 |
gctacagaataaaagccacagatgcaacatcatcaagcagc-aaacaaccgagtaaatat--cacagcttgttatcataaatgctaaattcaaccaaact |
5054344 |
T |
|
| Q |
301 |
atcagaaatggataataaatt |
321 |
Q |
| |
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|||| || |||||||||||| |
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| T |
5054343 |
atcaaaacaggataataaatt |
5054323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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