View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2571_low_6 (Length: 341)
Name: NF2571_low_6
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2571_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 36192592 - 36192467
Alignment:
| Q |
107 |
taccttcattcaaaaagatcgatagctcctttaaagagtggaaaattgggacaccagaagagagagagctgtttct--ccatctctaatgttttgaagga |
204 |
Q |
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| T |
36192592 |
taccttcattcaaaaagatcgatagcttcttgaaagagtggaaaattgggacaccggaacagagagagctgtttctcaccatctctaatgttttgaagga |
36192493 |
T |
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| Q |
205 |
taacaaaaggtatagcacatagttca |
230 |
Q |
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| T |
36192492 |
aaacaaaaggtatagcacatagttca |
36192467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 36192430 - 36192332
Alignment:
| Q |
234 |
cttctctttggagtaggaataagaatataacataagtttattg-catcagtctcactacccattcggtcagtagtcatatatccacacctcaatctctg |
331 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36192430 |
cttctctttggagtaggaattagaatataacataagtttattgtcatcagtctcactacccattcggtcagtaatcatatatccacacctcaatctctg |
36192332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 36192837 - 36192723
Alignment:
| Q |
1 |
ctgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgtaatattacatcctacctggtttt--------gaaaaggcttgccac |
92 |
Q |
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| T |
36192837 |
ctgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaaaatgtaatattacatcctacttggttttgaaattttgaaaatgcttgccac |
36192738 |
T |
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| Q |
93 |
tgtgactacttattt |
107 |
Q |
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| T |
36192737 |
tgtgactacttattt |
36192723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 5054901 - 5055023
Alignment:
| Q |
107 |
taccttcattcaaaaagatcgatagctcctttaaagagtggaaaattgggacaccagaagagagagagctgtttct--ccatctctaatgttttgaagga |
204 |
Q |
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||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
5054901 |
taccttcattcaaaaagattgatagcttcttgaaagagtggaaaattgggacaccagaacagagagagctgtttctcaccatctctaatgttttgaagga |
5055000 |
T |
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| Q |
205 |
taacaaaaggtatagcacatagt |
227 |
Q |
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| T |
5055001 |
aaacaaaaggtatagcacatagt |
5055023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5054655 - 5054735
Alignment:
| Q |
1 |
ctgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgtaatattacatcctacctggttttgaaa |
81 |
Q |
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| T |
5054655 |
ctgcaaaattagttcagcagccaaatgaaaagcctgcggtgcgattgaagatgtaatattacatcctacttggttttgaaa |
5054735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 5055063 - 5055160
Alignment:
| Q |
234 |
cttctctttggagtaggaataagaatataacataagtttattg-catcagtctcactacccattcggtcagtagtcatatatccacacctcaatctctg |
331 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| |
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| T |
5055063 |
cttctctttggagtaggaataagaatataacataag-ttattgtcatcagtctcactacctatttggtcaggagtcatatatccacaccacaatctctg |
5055160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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