View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2571_low_7 (Length: 313)

Name: NF2571_low_7
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2571_low_7
NF2571_low_7
[»] chr2 (1 HSPs)
chr2 (9-300)||(40709264-40709555)
[»] chr8 (4 HSPs)
chr8 (12-112)||(5861245-5861345)
chr8 (34-111)||(25129713-25129790)
chr8 (58-112)||(44300589-44300643)
chr8 (7-107)||(9229196-9229295)
[»] chr1 (1 HSPs)
chr1 (9-112)||(5716963-5717064)
[»] chr6 (2 HSPs)
chr6 (12-112)||(34249436-34249536)
chr6 (1-112)||(1094355-1094469)
[»] scaffold0009 (1 HSPs)
scaffold0009 (12-112)||(3137-3240)
[»] chr5 (2 HSPs)
chr5 (57-112)||(39777524-39777578)
chr5 (1-89)||(16098321-16098409)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 40709264 - 40709555
Alignment:
Q  9 cggaaatttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttcc 108  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  40709264 cggaaatttactttcagggcagtgattttggccacggcataacaaaactctcttctttctttcctaaccatccaaattttaatttactcttaatatttcc 40709363  T
Q  109 aacagattgtgttgattgtgcagttacaacctctatagattattttactacatgtttcggtgctgtggttatagcctgtgctgcaacctccgaaataacg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  40709364 aacagattgtgttgattgtgcagttacaacctctatagattattttactacatgtttcggtgttgtggttatagcctgtgctgcaacctccgaaataact 40709463  T
Q  209 ttgctaaaaatcttgtttatgacaaatatgagttgaatctaaactaacaacttggtgaaagctcttgtgagtagatttaattttcccttata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40709464 ttgctaaaaatcttgtttatgacaaatatgagttgaatctaaactaacaacttggtgaaagctcttgtgagtagatttaattttcccttata 40709555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 5861245 - 5861345
Alignment:
Q  12 aaatttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaac 111  Q
    |||||| ||||||| ||| |  ||||| |||||||||||||||||||| |||| || || ||||||||||||||||||||||||| ||||| ||||||||    
T  5861245 aaatttgctttcagagcagtagttttgaccacggcacaacaaaactcttttctatcatttctaactatccaaattctaatttacttttaatgtttccaac 5861344  T
Q  112 a 112  Q
    |    
T  5861345 a 5861345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 25129713 - 25129790
Alignment:
Q  34 ttttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaac 111  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||||  ||||||| |||||||||||||||||||||    
T  25129713 ttttgtccacggcacaacataactctcttcgatctttcctaactatctcaattctattttactcttaatatttccaac 25129790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 44300589 - 44300643
Alignment:
Q  58 ctcttctttctttcctaactatccaaattctaatttactcttaatatttccaaca 112  Q
    ||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||    
T  44300589 ctcttctatctttcctaactatctcaattctattttactcttaatatttccaaca 44300643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 9229295 - 9229196
Alignment:
Q  7 atcggaaatttactttcagggcaatgattttggccacggcacaacaaaactctcttctttc-tttcctaactatccaaattctaatttactcttaatatt 105  Q
    |||| |||||| ||||||| | | || ||||||||||||||||||  || |||||||| || |||||||||| ||  ||||||| || ||||||||||||    
T  9229295 atcgaaaattttctttcagagtagtggttttggccacggcacaac--aattctcttctatcttttcctaactctctcaattctagttcactcttaatatt 9229198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 5716963 - 5717064
Alignment:
Q  9 cggaaatttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttcc 108  Q
    ||||||||| | ||||||||| || ||||  ||||||||||||||  ||||||||| |||||||||||| || |||||||| ||||||||||||||||||    
T  5716963 cggaaatttgcattcagggcagtggtttttaccacggcacaacaa--ctctcttctatctttcctaactctctaaattctagtttactcttaatatttcc 5717060  T
Q  109 aaca 112  Q
    ||||    
T  5717061 aaca 5717064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 34249436 - 34249536
Alignment:
Q  12 aaatttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattctaatttactcttaatatttccaac 111  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||||  ||| || ||||||||| ||  ||||||| ||| |||||||||||||||||    
T  34249436 aaattttctttcagagcaatggttttgaccacggcacaacaaaactcttctctatcattcctaactctctcaattctagttttctcttaatatttccaac 34249535  T
Q  112 a 112  Q
    |    
T  34249536 a 34249536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1094469 - 1094355
Alignment:
Q  1 agatccatcggaaatttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaa-----attctaatttac 95  Q
    ||||||| || |||||| |||||||| || ||| ||| | |||||||||||  ||||||||||| ||||||||| |||| |||     ||| || |||||    
T  1094469 agatccaccgaaaatttgctttcaggacagtgacttttgtcacggcacaac--aactctcttctatctttcctatctattcaaaatctattatattttac 1094372  T
Q  96 tcttaatatttccaaca 112  Q
    |||||||||||||||||    
T  1094371 tcttaatatttccaaca 1094355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 3240 - 3137
Alignment:
Q  12 aaatttactttcagggcaatgattttggccacggcacaacaaaactctcttct-ttctttcctaac---tatccaaattctaatttactcttaatatttc 107  Q
    |||||| ||||||||| || | ||||||||||||||||||||||||||||||| ||||||| ||||   |||||||||||| |||| |||||||||||||    
T  3240 aaatttgctttcagggtaaaggttttggccacggcacaacaaaactctcttctattctttcataaccaatatccaaattct-atttcctcttaatatttc 3142  T
Q  108 caaca 112  Q
     ||||    
T  3141 aaaca 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 39777524 - 39777578
Alignment:
Q  57 tctcttctttctttcctaactatccaaattctaatttactcttaatatttccaaca 112  Q
    |||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  39777524 tctcttctatctttcctagctatccaaaatctaattt-ctcttaatatttccaaca 39777578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16098409 - 16098321
Alignment:
Q  1 agatccatcggaaatttactttcagggcaatgattttggccacggcacaacaaaactctcttctttctttcctaactatccaaattcta 89  Q
    ||||||| ||||| ||| ||||||||| | || ||||||||||||||||| ||| |||||| ||   |||||| |||||||||| ||||    
T  16098409 agatccaccggaattttgctttcagggtagtggttttggccacggcacaataaatctctctcctaattttccttactatccaaaatcta 16098321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University