View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2571_low_8 (Length: 303)

Name: NF2571_low_8
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2571_low_8
NF2571_low_8
[»] scaffold0003 (4 HSPs)
scaffold0003 (159-238)||(34871-34950)
scaffold0003 (159-231)||(41541-41613)
scaffold0003 (25-61)||(41497-41533)
scaffold0003 (25-61)||(34827-34863)
[»] chr6 (4 HSPs)
chr6 (159-231)||(27445745-27445817)
chr6 (180-252)||(20909203-20909274)
chr6 (180-252)||(20923651-20923722)
chr6 (25-61)||(27445825-27445861)
[»] chr8 (2 HSPs)
chr8 (139-252)||(42312276-42312388)
chr8 (173-252)||(15580653-15580733)
[»] chr1 (2 HSPs)
chr1 (139-234)||(47247043-47247137)
chr1 (142-252)||(41326063-41326172)


Alignment Details
Target: scaffold0003 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 34871 - 34950
Alignment:
Q  159 agtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacacccccagtt 238  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  34871 agtatttcatttagatcataaaaagtcacctttcatagcctttgttgttttcatgcttcaaggaatgaacacccccagtt 34950  T

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Target: scaffold0003; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 41541 - 41613
Alignment:
Q  159 agtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacacc 231  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41541 agtatttcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacacc 41613  T

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Target: scaffold0003; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 41497 - 41533
Alignment:
Q  25 agcagcactttaattcttcaaaattaatatagcagca 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  41497 agcagcactttaattcttcaaaattaatatagcagca 41533  T

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Target: scaffold0003; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 34827 - 34863
Alignment:
Q  25 agcagcactttaattcttcaaaattaatatagcagca 61  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34827 agcagcactttaattcttcaaaactaatatagcagca 34863  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 27445817 - 27445745
Alignment:
Q  159 agtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacacc 231  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27445817 agtatttcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacacc 27445745  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 20909203 - 20909274
Alignment:
Q  180 aaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacacccccagttggtatagcaagagt 252  Q
    ||||||||||||||||   ||||||||||||| ||||||| |||||||||||||||||| || ||||||||||    
T  20909203 aaagtcaccttttatatt-tttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagt 20909274  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 20923651 - 20923722
Alignment:
Q  180 aaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacacccccagttggtatagcaagagt 252  Q
    ||||||||||||||||   ||||||||||||| ||||||| |||||||||||||||||| || ||||||||||    
T  20923651 aaagtcaccttttatatt-tttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagt 20923722  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 27445861 - 27445825
Alignment:
Q  25 agcagcactttaattcttcaaaattaatatagcagca 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  27445861 agcagcactttaattcttcaaaattaatatagcagca 27445825  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 42312276 - 42312388
Alignment:
Q  139 acatgtataagttcactcatagtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacacccccagtt 238  Q
    |||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||   |||||| |||||||||||||| ||||||||||||||||||    
T  42312276 acatgtataatttcgctcatagtatttcatctacatcagagaaagtcaccttttata-tttttgttcttttcctgcttcaatgaatgaacacccccagtt 42312374  T
Q  239 ggtatagcaagagt 252  Q
     ||  |||||||||    
T  42312375 tgtccagcaagagt 42312388  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 15580653 - 15580733
Alignment:
Q  173 atcataaaaagtcaccttttatagcctttgttg-ttttcctgcttcaaggaatgaacacccccagttggtatagcaagagt 252  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||| || ||| ||||| ||||||||  | ||||||||||    
T  15580653 atcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacaaccccagttaatctagcaagagt 15580733  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 47247137 - 47247043
Alignment:
Q  139 acatgtataagttcactcatagtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacaccccc 234  Q
    |||||||||| ||| || |||||||||||| ||||||||| ||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  47247137 acatgtataatttcgcttatagtatttcatctacatcatagaaagtcaccttttata-tttttgttgttttcctgcttcaatgaatgaacaccccc 47247043  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 41326063 - 41326172
Alignment:
Q  142 tgtataagttcactcatagtatttcatttacatcataaaaagtcaccttttatagcctttgttgttttcctgcttcaaggaatgaacacccccagttggt 241  Q
    ||||||| ||| |||||||| |||||| ||||||||| |||||||||||||||    ||||||||||||| ||||||| |||||||||||||||||| ||    
T  41326063 tgtataatttcgctcatagtttttcatctacatcatagaaagtcaccttttatttt-tttgttgttttcccgcttcaatgaatgaacacccccagtttgt 41326161  T
Q  242 atagcaagagt 252  Q
     ||||||||||    
T  41326162 ctagcaagagt 41326172  T

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