View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2571_low_9 (Length: 278)

Name: NF2571_low_9
Description: NF2571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2571_low_9
NF2571_low_9
[»] chr4 (10 HSPs)
chr4 (1-153)||(3569919-3570075)
chr4 (165-260)||(4228291-4228386)
chr4 (156-260)||(47597574-47597678)
chr4 (199-255)||(44307583-44307639)
chr4 (195-254)||(34389795-34389854)
chr4 (195-254)||(36894406-36894465)
chr4 (199-255)||(1217218-1217274)
chr4 (199-255)||(1369493-1369549)
chr4 (199-255)||(28945360-28945416)
chr4 (181-249)||(11896048-11896116)
[»] chr7 (8 HSPs)
chr7 (155-260)||(24468610-24468715)
chr7 (155-260)||(24473558-24473663)
chr7 (163-256)||(48619052-48619145)
chr7 (199-255)||(8035770-8035826)
chr7 (199-255)||(5350053-5350109)
chr7 (199-255)||(38110666-38110722)
chr7 (199-246)||(8019742-8019789)
chr7 (200-255)||(46045967-46046022)
[»] chr5 (10 HSPs)
chr5 (155-260)||(18934163-18934268)
chr5 (155-260)||(4560300-4560405)
chr5 (156-260)||(18883492-18883596)
chr5 (199-255)||(239963-240019)
chr5 (199-255)||(14024994-14025050)
chr5 (162-246)||(34080736-34080820)
chr5 (163-256)||(22540328-22540421)
chr5 (175-260)||(42131416-42131501)
chr5 (199-255)||(32386547-32386603)
chr5 (180-240)||(32786038-32786098)
[»] chr3 (9 HSPs)
chr3 (155-260)||(54812232-54812337)
chr3 (155-260)||(46428666-46428771)
chr3 (155-249)||(42794596-42794690)
chr3 (163-256)||(27156155-27156248)
chr3 (155-260)||(43912236-43912341)
chr3 (163-256)||(54346853-54346946)
chr3 (199-255)||(37503148-37503204)
chr3 (200-255)||(25905871-25905926)
chr3 (195-256)||(43813097-43813158)
[»] chr8 (11 HSPs)
chr8 (155-260)||(38560602-38560707)
chr8 (155-260)||(44145814-44145919)
chr8 (189-249)||(1362962-1363022)
chr8 (199-255)||(42000334-42000390)
chr8 (199-255)||(45093500-45093556)
chr8 (199-245)||(35808261-35808307)
chr8 (163-256)||(1636116-1636209)
chr8 (163-256)||(26616714-26616807)
chr8 (195-256)||(456348-456409)
chr8 (192-253)||(9031587-9031648)
chr8 (199-255)||(33373257-33373313)
[»] chr2 (12 HSPs)
chr2 (155-260)||(17290139-17290244)
chr2 (195-256)||(7305068-7305129)
chr2 (195-256)||(13187038-13187099)
chr2 (195-256)||(6599069-6599130)
chr2 (200-255)||(40615032-40615087)
chr2 (201-255)||(11995725-11995779)
chr2 (182-243)||(26381267-26381328)
chr2 (195-256)||(37307282-37307343)
chr2 (199-255)||(42865976-42866032)
chr2 (191-249)||(6372683-6372741)
chr2 (3-32)||(18670401-18670430)
chr2 (163-256)||(40426155-40426248)
[»] chr1 (12 HSPs)
chr1 (155-260)||(22065185-22065290)
chr1 (195-256)||(5308792-5308853)
chr1 (195-256)||(23949848-23949909)
chr1 (163-256)||(42677309-42677402)
chr1 (189-256)||(8059849-8059916)
chr1 (163-256)||(23084898-23084991)
chr1 (163-256)||(50952555-50952648)
chr1 (199-255)||(16855004-16855060)
chr1 (200-255)||(6294076-6294131)
chr1 (195-246)||(34553870-34553921)
chr1 (200-255)||(39476120-39476175)
chr1 (199-255)||(28706051-28706107)
[»] chr6 (2 HSPs)
chr6 (205-260)||(1222964-1223019)
chr6 (155-187)||(1223019-1223051)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 3570075 - 3569919
Alignment:
Q  1 atgaattaaaagatgatatgctgattcattataacaaatgcatggtgattgttaaaagaggaacttaaatggccaaa----tcacttgagtattaatttt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  3570075 atgaattaaaagatgatatgctgattcattataacaaatgcatggtgattgttaaaagaggaacttaaatggccaaaccaatcacttgagtattaatttt 3569976  T
Q  97 attagtattaattactttatgtcacatagtatagtattttttgacaagtacatagta 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3569975 attagtattaattactttatgtcacatagtatagtattttttgacaagtacatagta 3569919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 4228291 - 4228386
Alignment:
Q  165 agctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtga 260  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228291 agctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtga 4228386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 47597678 - 47597574
Alignment:
Q  156 gtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  47597678 gtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcataaaggaaatagaagtgccgattggcttgctaattttagcatttt 47597579  T
Q  256 tgtga 260  Q
    |||||    
T  47597578 tgtga 47597574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 44307583 - 44307639
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  44307583 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 44307639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 34389854 - 34389795
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    |||||||||||| ||||||||||||||| ||||| |||||||| |||||||| |||||||    
T  34389854 tcaaccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaagcattt 34389795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 36894465 - 36894406
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    |||||||||||||||||||||||||||| ||||  |||||||| |||||||| |||||||    
T  36894465 tcaaccatacttggcgtgaaggaaataggagtgttgattggctcgctaatttaagcattt 36894406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 1217218 - 1217274
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  1217218 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 1369493 - 1369549
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  1369493 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 28945416 - 28945360
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  28945416 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 28945360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 11896116 - 11896048
Alignment:
Q  181 ttggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 249  Q
    ||||||| | || ||||||||||| ||||||||||||||||||   || |||||||| |||||||||||    
T  11896116 ttggcatgttcatatcaaccatacatggcgtgaaggaaatagatcagcagattggctagctaattttag 11896048  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 24468610 - 24468715
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24468610 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 24468709  T
Q  255 ctgtga 260  Q
    ||||||    
T  24468710 ctgtga 24468715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 24473558 - 24473663
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473558 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 24473657  T
Q  255 ctgtga 260  Q
    ||||||    
T  24473658 ctgtga 24473663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 48619052 - 48619145
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  48619052 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttct 48619145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 8035770 - 8035826
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  8035770 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 8035826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 5350053 - 5350109
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||||| || | |||||| ||||||||||||||||| ||||||||    
T  5350053 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 5350109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 38110722 - 38110666
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  38110722 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 38110666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 8019789 - 8019742
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 246  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  8019789 ccatacttggcgtgaaggaaataggagtgctgattggctcgctaattt 8019742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 46045967 - 46046022
Alignment:
Q  200 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  46045967 catacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 46046022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 18934163 - 18934268
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934163 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 18934262  T
Q  255 ctgtga 260  Q
    ||||||    
T  18934263 ctgtga 18934268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 4560405 - 4560300
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  4560405 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcattt 4560306  T
Q  255 ctgtga 260  Q
    ||||||    
T  4560305 ctgtga 4560300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 18883492 - 18883596
Alignment:
Q  156 gtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||| |||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||     
T  18883492 gtatcaggaagctactgagaatggattgacatgtgcaaatcaaccatacttggcgcgaaggaaatagatatgccgattggcttgctaattttagcatttt 18883591  T
Q  256 tgtga 260  Q
    |||||    
T  18883592 tgtga 18883596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 240019 - 239963
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  240019 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 239963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 14024994 - 14025050
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  14024994 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 14025050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 34080820 - 34080736
Alignment:
Q  162 agaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 246  Q
    ||||||||||||  |||| |||| || | ||| ||||||||||||||||||||||||| |  ||||  |||||||||||||||||    
T  34080820 agaagctgctgaagatgggttggaatgttcaactcaaccatacttggcgtgaaggaaacatgagtgttgattggcttgctaattt 34080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 22540328 - 22540421
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| ||||||||||||||||| |||||||||| ||||  ||||| || |||||||| |||||||||    
T  22540328 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtaaaggaaataggagtgttgattgactcgctaatttaagcatttct 22540421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 42131416 - 42131501
Alignment:
Q  175 aatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtga 260  Q
    |||| |||||||| |||||||||  ||| ||| | |  ||||||||||||||| |||||| |||||| |||||| |||||||||||    
T  42131416 aatgaattggcatgtgcaaatcagtcatgcttagtggaaaggaaatagaagtgtcgattgacttgctcattttaacatttctgtga 42131501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 32386547 - 32386603
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||    
T  32386547 ccatacttggcgtgaaggcaacataagtgctgattgacttgctaatttcagcatttc 32386603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 32786038 - 32786098
Alignment:
Q  180 attggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgc 240  Q
    |||||||| |||||||||| ||||||||  |||||||||||| |||||  |||||| ||||    
T  32786038 attggcatgtgcaaatcaatcatacttgttgtgaaggaaataaaagtgttgattggtttgc 32786098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 54812337 - 54812232
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812337 cgtatcaggaagctgctgagaatggattagcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 54812238  T
Q  255 ctgtga 260  Q
    ||||||    
T  54812237 ctgtga 54812232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 46428666 - 46428771
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46428666 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcatgaaggaaatagaagtgccgattggcttgctaattttagcattt 46428765  T
Q  255 ctgtga 260  Q
     |||||    
T  46428766 atgtga 46428771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 42794596 - 42794690
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 249  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42794596 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 42794690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 27156248 - 27156155
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  27156248 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttcagcatttct 27156155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 43912341 - 43912236
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||| ||| ||||||||||||  |||||||||||||||  ||||| |||| ||||| |||||   |||  ||||||||||||| |||||    
T  43912341 cgtatcaggaagctgttgaaaatggattggcaagtgcaaatcaaccatatctggcgcgaagaaaatataagtgtatattaccttgctaattttaacattt 43912242  T
Q  255 ctgtga 260  Q
    ||||||    
T  43912241 ctgtga 43912236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 54346853 - 54346946
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| ||| |||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  54346853 gaagctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 54346946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 37503148 - 37503204
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    ||||||||| |||||||| || |||||||| ||||| ||||||||||||||||||||    
T  37503148 ccatacttgacgtgaaggcaacagaagtgcagattgacttgctaattttagcatttc 37503204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 25905871 - 25905926
Alignment:
Q  200 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    ||||||||| ||||||| || |||||||| ||||| ||||||||||| ||||||||    
T  25905871 catacttggtgtgaaggcaacagaagtgcagattgacttgctaatttcagcatttc 25905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 43813097 - 43813158
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    ||||||||| |||||||||||||||| | ||||| ||||| || ||||| || |||||||||    
T  43813097 tcaaccataattggcgtgaaggaaattggagtgctgattgactcgctaacttaagcatttct 43813158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 38560707 - 38560602
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  38560707 cgtatcaagaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcacgaaggaaatagaagtgccgattggcttgctaattttagcattt 38560608  T
Q  255 ctgtga 260  Q
     |||||    
T  38560607 ttgtga 38560602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 44145814 - 44145919
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  44145814 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcattt 44145913  T
Q  255 ctgtga 260  Q
    ||||||    
T  44145914 ctgtga 44145919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 1362962 - 1363022
Alignment:
Q  189 tgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 249  Q
    ||||| |||||||||| ||||  || |||||||||||||| ||||||||||||||||||||    
T  1362962 tgcaattcaaccatacctggcaggagggaaatagaagtgctgattggcttgctaattttag 1363022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 42000334 - 42000390
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||||| || | |||||| ||||||||||||||||| ||||||||    
T  42000334 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42000390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 45093500 - 45093556
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||    
T  45093500 ccatacttggcgtgaaggcaacagaagtgcagattggcttgcaaatttcagcatttc 45093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 35808261 - 35808307
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaatt 245  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||    
T  35808261 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatt 35808307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 1636116 - 1636209
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| ||| |||||||| ||||||||||||||| ||||| |||||||| |||||||| | |||||||    
T  1636116 gaagctgctgaagatgagttggaatgttcaactcacccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaatcatttct 1636209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 26616807 - 26616714
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||  ||| | ||||||||  ||||||| |||||||||    
T  26616807 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtactgattggctcactaatttaagcatttct 26616714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 456409 - 456348
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    ||||||||||||| || ||||||||||| |||||  ||||||| |||||||| | |||||||    
T  456409 tcaaccatacttgacgcgaaggaaataggagtgctaattggctcgctaatttaaacatttct 456348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 9031648 - 9031587
Alignment:
Q  192 aaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatt 253  Q
    |||| ||||||||||  |||||||||||||||||||  ||||||||||| ||  ||||||||    
T  9031648 aaattaaccatacttaacgtgaaggaaatagaagtgttgattggcttgcaaacattagcatt 9031587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 33373257 - 33373313
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || | |||||| |||||| |||||||||| ||||||||    
T  33373257 ccatacttggcgggaaggcaacaaaagtgcagattggattgctaatttcagcatttc 33373313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 17290139 - 17290244
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17290139 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatatttggcgtgaaggaaatagaagtgccgattggcttgctaattttagtattt 17290238  T
Q  255 ctgtga 260  Q
    ||||||    
T  17290239 ctgtga 17290244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 7305129 - 7305068
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||||||||||||||||||| ||||| ||||||||  ||||||| |||||||||    
T  7305129 tcaaccatacttggcgtgaaggaaataggagtgctgattggctctctaatttaagcatttct 7305068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 13187038 - 13187099
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  13187038 tcaatcatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 13187099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 6599069 - 6599130
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    ||||||||| |||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  6599069 tcaaccataattggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttct 6599130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 40615087 - 40615032
Alignment:
Q  200 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    ||||||||||||||||| || |||||||| |||||| |||||||||| ||||||||    
T  40615087 catacttggcgtgaaggtaacagaagtgcagattggtttgctaatttcagcatttc 40615032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 11995779 - 11995725
Alignment:
Q  201 atacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||    
T  11995779 atacttggcgtgaaggcaacagaagtgcagattgtcttgctaatttcagcatttc 11995725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 26381328 - 26381267
Alignment:
Q  182 tggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaa 243  Q
    |||||| |||||||||||||||||| | |||||||||||| ||||   ||||||||||||||    
T  26381328 tggcatgtgcaaatcaaccatacttcgtgtgaaggaaataaaagttttgattggcttgctaa 26381267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 37307343 - 37307282
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    ||||||||||||| |||||||||||||| ||||| |||||||| | ||| || |||||||||    
T  37307343 tcaaccatacttgacgtgaaggaaataggagtgctgattggctcgttaacttaagcatttct 37307282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 42865976 - 42866032
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || | |||||| ||||||||||||||||| ||||||||    
T  42865976 ccatacttggcgggaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42866032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 6372683 - 6372741
Alignment:
Q  191 caaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 249  Q
    ||||||||||||||||||||||||||||| | |   || |||||||| |||||||||||    
T  6372683 caaatcaaccatacttggcgtgaaggaaacaaatcggctgattggctagctaattttag 6372741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 18670430 - 18670401
Alignment:
Q  3 gaattaaaagatgatatgctgattcattat 32  Q
    ||||||||||||||||||||||||||||||    
T  18670430 gaattaaaagatgatatgctgattcattat 18670401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 40426248 - 40426155
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| ||| ||||| |||| ||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  40426248 gaagctgctgaagatgagttggaatgttcaactcacccatatttggtgtgaaggaaataggagtgctgattgactcgctaatttaagcatttct 40426155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 22065290 - 22065185
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 254  Q
    ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22065290 cgtatcaggaggctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatat 22065191  T
Q  255 ctgtga 260  Q
    ||||||    
T  22065190 ctgtga 22065185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 5308792 - 5308853
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  5308792 tcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 5308853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 23949848 - 23949909
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  23949848 tcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 23949909  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 42677309 - 42677402
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  42677309 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 42677402  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 8059916 - 8059849
Alignment:
Q  189 tgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    ||||| |||||||||| ||||| || |||||||||||||| ||||||||||||||||||||| |||||    
T  8059916 tgcaattcaaccatacctggcgcgagggaaatagaagtgctgattggcttgctaattttagcttttct 8059849  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 23084991 - 23084898
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| ||||||||| |||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  23084991 gaagctgctgaagatgagttggaatgttcaactcaaccatatttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 23084898  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 50952648 - 50952555
Alignment:
Q  163 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 256  Q
    |||||||||||  |||  |||| || | ||| ||||||||||||||||||||| |||||| ||||| |||||||| |||||| | |||||||||    
T  50952648 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaagaaaataggagtgctgattggctcgctaatataagcatttct 50952555  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 16855004 - 16855060
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  16855004 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 16855060  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 6294076 - 6294131
Alignment:
Q  200 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  6294076 catacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 6294131  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 34553921 - 34553870
Alignment:
Q  195 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 246  Q
    |||||||||||||| ||||||||||||||||||| ||||| || ||||||||    
T  34553921 tcaaccatacttggtgtgaaggaaatagaagtgctgattgactcgctaattt 34553870  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 39476120 - 39476175
Alignment:
Q  200 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    ||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||    
T  39476120 catacttggcgtgaaggcaacaaaagtgcagattgtcttgctaatttcagcatttc 39476175  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 28706051 - 28706107
Alignment:
Q  199 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 255  Q
    |||||||||||||||||| || | |||||   |||||||||||||||| ||||||||    
T  28706051 ccatacttggcgtgaaggcaacaaaagtgtatattggcttgctaatttcagcatttc 28706107  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 1223019 - 1222964
Alignment:
Q  205 ttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtga 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223019 ttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtga 1222964  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 1223051 - 1223019
Alignment:
Q  155 cgtatcaagaagctgctgagaatggattggcat 187  Q
    ||||||| |||||||||||||||||||||||||    
T  1223051 cgtatcaggaagctgctgagaatggattggcat 1223019  T

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