View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2572_low_2 (Length: 467)

Name: NF2572_low_2
Description: NF2572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2572_low_2
NF2572_low_2
[»] chr7 (9 HSPs)
chr7 (1-256)||(17734641-17734895)
chr7 (251-452)||(17735216-17735415)
chr7 (1-255)||(17743881-17744145)
chr7 (1-226)||(16720657-16720884)
chr7 (1-226)||(17697671-17697898)
chr7 (9-173)||(17716598-17716762)
chr7 (9-173)||(16729538-16729702)
chr7 (9-173)||(17706610-17706774)
chr7 (321-420)||(17744511-17744611)
[»] chr8 (1 HSPs)
chr8 (1-110)||(21465819-21465928)
[»] chr4 (1 HSPs)
chr4 (65-116)||(37147601-37147652)
[»] chr3 (4 HSPs)
chr3 (62-116)||(47398188-47398242)
chr3 (62-113)||(5155454-5155505)
chr3 (63-113)||(46543301-46543351)
chr3 (1-105)||(46550164-46550268)
[»] chr2 (2 HSPs)
chr2 (67-116)||(20143701-20143750)
chr2 (67-116)||(20169760-20169809)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 17734641 - 17734895
Alignment:
Q  1 ctcagcttgtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17734641 ctcagcttgtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttca 17734740  T
Q  101 accttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgctgttgatttcgtcaacaaggtaatcatacataaaataactcacaaatta 200  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  17734741 accttccttcaaacaactcatgactactgatttcaaagcgactcttgctgctgttgatttcatcaacaaggtactcatacataaaataactcacaaatta 17734840  T
Q  201 gggtttgaagtttagtgttatgatatttgtttttagcagacaaattgataaaaaac 256  Q
    ||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||    
T  17734841 gggtttgaagtttagtgttgtgata-ttctttttagcagacaaagtgataaaaaac 17734895  T

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Target: chr7; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 251 - 452
Target Start/End: Original strand, 17735216 - 17735415
Alignment:
Q  251 aaaaacaaacttgtgcatagtgcatggctatcttgtgcacagtagacaaaaccaattaataatgtgacttttgaatgttttaccacttgtttgaaaactg 350  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17735216 aaaaacaaacttgtgcatag--catggctatcttgtgcacagtagacaaaaccaattaataatgtgacttttgaatgttttaccacttgtttgaaaactg 17735313  T
Q  351 taattagcacaccaagaagtgactttagtattatgaatttattttttattttgatcatacaaactagctagcattattggggacagtaatttgtataacc 450  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17735314 taattagcacacgaagaagtgactttagtattatgaatttattttttattttgatcatacaaactagctagcattattggagacagtaatttgtataacc 17735413  T

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Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 17743881 - 17744145
Alignment:
Q  1 ctcagcttgtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttca 100  Q
    ||||| |||||||||||||||||||||| || ||||  || ||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  17743881 ctcaggttgtttcttctgtgctctccgacggggctcgtgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaaaaatcacttcctcttca 17743980  T
Q  101 accttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgctgttgatttcgtcaacaaggtaatcatacat-----------aaaataa 189  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| | |            ||||||    
T  17743981 accttccttcaaacaactcatgactactgatttcgaagcgactctttctgctgttgatttcgtcaacaaggtactcatgcttttatttattcataaataa 17744080  T
Q  190 ctcacaaattagggtttgaagtttagtgttatgatatttgtttttagcagacaaattgataaaaaa 255  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| |||| || ||||||||||    
T  17744081 ctcacaaattagggtttgaagtttagcgttatgatattt-tttttagtagactaagtgataaaaaa 17744145  T

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Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16720657 - 16720884
Alignment:
Q  1 ctcagcttgtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttca 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||  || ||||||||||    
T  16720657 ctcagcttgtttcttctgtgctctccgatggcgctcccgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaacagacaattcctcttca 16720756  T
Q  101 accttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgctgttgatttcgtcaacaaggtaatcatacataaaataa--ctcacaaat 198  Q
    ||||| |||||||||||| |||| ||||||||||||||   || ||||||||||||||||||||||||||||| | || | |  | |    ||||||| |    
T  16720757 accttccttcaaacaacttatgaatactgatttcaaagctgcttttgctgctgttgatttcgtcaacaaggtactaatgcttttatttgttctcacaagt 16720856  T
Q  199 tagggtttgaagtttagtgttatgatat 226  Q
    ||||||||||||||||||||||| ||||    
T  16720857 tagggtttgaagtttagtgttatcatat 16720884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 17697671 - 17697898
Alignment:
Q  1 ctcagcttgtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttca 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||  || ||||||||||    
T  17697671 ctcagcttgtttcttctgtgctctccgatggcgctcccgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaacagacaattcctcttca 17697770  T
Q  101 accttgcttcaaacaactcatgactactgatttcaaagtgactcttgctgctgttgatttcgtcaacaaggtaatcatacataaaataa--ctcacaaat 198  Q
    ||||| |||||||||||| |||| ||||||||||||||   || ||||||||||||||||||||||||||||| | || | |  | |    ||||||| |    
T  17697771 accttccttcaaacaacttatgaatactgatttcaaagctgcttttgctgctgttgatttcgtcaacaaggtactaatgcttttatttgttctcacaagt 17697870  T
Q  199 tagggtttgaagtttagtgttatgatat 226  Q
    ||||||||||||||||||||||| ||||    
T  17697871 tagggtttgaagtttagtgttatcatat 17697898  T

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Target: chr7; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 17716598 - 17716762
Alignment:
Q  9 gtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgct 108  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17716598 gtttcttctgtgctctccgatggcgctcccgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttcct 17716697  T
Q  109 tcaaacaactcatgactactgatttcaaagtgactcttgctgctgttgatttcgtcaacaaggta 173  Q
    | |||||||| |||||||||||||| ||||  ||||||||||  |||||||||||||||||||||    
T  17716698 ttaaacaacttatgactactgattttaaagctactcttgctgaagttgatttcgtcaacaaggta 17716762  T

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Target: chr7; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 16729538 - 16729702
Alignment:
Q  9 gtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgct 108  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16729538 gtttcttctgtgctctccgatggcactcccgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttcct 16729637  T
Q  109 tcaaacaactcatgactactgatttcaaagtgactcttgctgctgttgatttcgtcaacaaggta 173  Q
    | |||||||| |||||||||||||| ||||  ||||||||||  ||||||||| |||||||||||    
T  16729638 ttaaacaacttatgactactgattttaaagctactcttgctgaagttgatttcctcaacaaggta 16729702  T

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Target: chr7; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 17706610 - 17706774
Alignment:
Q  9 gtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgct 108  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17706610 gtttcttctgtgctctccgatggcactcccgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttcct 17706709  T
Q  109 tcaaacaactcatgactactgatttcaaagtgactcttgctgctgttgatttcgtcaacaaggta 173  Q
    | |||||||| |||||||||||||| ||||  ||||||||||  ||||||||| |||||||||||    
T  17706710 ttaaacaacttatgactactgattttaaagctactcttgctgaagttgatttcctcaacaaggta 17706774  T

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Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 420
Target Start/End: Original strand, 17744511 - 17744611
Alignment:
Q  321 ttgaatgttttaccacttgtttgaaaactgtaattag--cacaccaagaagtgactttagtattatgaatttattttttattttgatcatacaaactagc 418  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||    
T  17744511 ttgaatgttttaccacttgtttgaaaactctaattagcacacacgaagaagtgactttagtattatgaattta-tttttattttgaaaatacaaacttgc 17744609  T
Q  419 ta 420  Q
    ||    
T  17744610 ta 17744611  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21465928 - 21465819
Alignment:
Q  1 ctcagcttgtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttca 100  Q
    ||||||||||||| |||||||||||   ||  |||||||| || || |||  | || ||  |||||||||| |||||||||||||||||||| |||||||    
T  21465928 ctcagcttgtttcctctgtgctctctagtgctgctcccgctggcggacctcacttggctttcgtcaatggtatgtgggttgaacaatcactttctcttca 21465829  T
Q  101 accttgcttc 110  Q
    ||||| ||||    
T  21465828 accttccttc 21465819  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 37147601 - 37147652
Alignment:
Q  65 caatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 116  Q
    ||||||||||||| |||||||||||||| ||||||||| || ||||||||||    
T  37147601 caatggtgtgtggattgaacaatcactttctcttcaacattccttcaaacaa 37147652  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 47398242 - 47398188
Alignment:
Q  62 cgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 116  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||| ||||||||||    
T  47398242 cgtcaatggcgtgtgggttgaacaaaccctttctcttcaaccttccttcaaacaa 47398188  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 5155454 - 5155505
Alignment:
Q  62 cgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaa 113  Q
    |||||||||||| |||||||||||| | ||| |||||||||||| |||||||    
T  5155454 cgtcaatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaa 5155505  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 46543301 - 46543351
Alignment:
Q  63 gtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaa 113  Q
    ||||||||||| |||||||||||||||||| || |||||| || |||||||    
T  46543301 gtcaatggtgtatgggttgaacaatcacttacttttcaacattccttcaaa 46543351  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 46550268 - 46550164
Alignment:
Q  1 ctcagcttgtttcttctgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttca 100  Q
    |||| ||||||||||||||| |||| ||||  ||||||   ||  | |||||||| |||  ||||||||||| |||| |||||||| | ||| |||||||    
T  46550268 ctcaacttgtttcttctgtgttctctgatgctgctccccttggcaggccttgcctctctttcgtcaatggtgcgtggattgaacaaaccctttctcttca 46550169  T
Q  101 acctt 105  Q
    |||||    
T  46550168 acctt 46550164  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 20143701 - 20143750
Alignment:
Q  67 atggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 116  Q
    ||||||| |||||||||||| | ||| |||||||||||| ||||||||||    
T  20143701 atggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaa 20143750  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 20169809 - 20169760
Alignment:
Q  67 atggtgtgtgggttgaacaatcacttcctcttcaaccttgcttcaaacaa 116  Q
    ||||||| |||||||||||| | ||| |||||||||||| ||||||||||    
T  20169809 atggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaa 20169760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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