View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2572_low_5 (Length: 330)
Name: NF2572_low_5
Description: NF2572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2572_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 5828214 - 5828525
Alignment:
| Q |
1 |
acaatcaaaagaaaaatcaatagagagaggagcaatcaaacaaacaaaagaattaatcaggagataatcaaccaaacagacaaatcaacagagtgagaat |
100 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
5828214 |
acaatcaaaagaaaaaccaataaagagaggagcaatcaaacaaacaaaagaatcaataaagagataatcaaccaaacagacaaatcaacagagtgagaat |
5828313 |
T |
|
| Q |
101 |
caataatcaatcaaacataagaagaagcaaccaaagagagaaatcaaaccaaatcaaacaatcaaccatagaaattgcattgtcaaagtggttatttatc |
200 |
Q |
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| T |
5828314 |
caataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaatcaaacaatcaaccatagaaattgcagtgtcaaagtggttatttatc |
5828413 |
T |
|
| Q |
201 |
caaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcaccataacatctctagtatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828414 |
caaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcaccataacatctctagtatctt |
5828513 |
T |
|
| Q |
301 |
ggatggacttgc |
312 |
Q |
| |
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|||||||||||| |
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| T |
5828514 |
ggatggacttgc |
5828525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 6853560 - 6853441
Alignment:
| Q |
181 |
tgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcac |
280 |
Q |
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||||||||||| |||| |||||| || |||||||||| || |||||| |||| | || || | |||||| ||||| ||||||||||| | ||||||||| |
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| T |
6853560 |
tgtcaaagtggatattcatccaagtcgcacatcgggtggtgagaagaaaaaagaggttgaggcttattataaata--gagttatattgtgatttcttcac |
6853463 |
T |
|
| Q |
281 |
cataacatctctagtatcttgg |
302 |
Q |
| |
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|| |||||||||||| |||||| |
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| T |
6853462 |
cacaacatctctagtctcttgg |
6853441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 32496079 - 32496026
Alignment:
| Q |
242 |
ggttattaaaaatatagagttatattgagttttcttcaccataacatctctagt |
295 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||| |||| |||||||| |
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| T |
32496079 |
ggttattataaatatagagttaaattgagttttcttcactttaacttctctagt |
32496026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 31105937 - 31105967
Alignment:
| Q |
251 |
aaatatagagttatattgagttttcttcacc |
281 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
31105937 |
aaatatagagttatattgagttttcttcacc |
31105967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 6901177 - 6901210
Alignment:
| Q |
120 |
agaagaagcaaccaaagagagaaatcaaaccaaa |
153 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
6901177 |
agaagaagcaaccaaagagtgaaatcaaaccaaa |
6901210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 29205609 - 29205581
Alignment:
| Q |
259 |
agttatattgagttttcttcaccataaca |
287 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29205609 |
agttatattgagttttcttcaccataaca |
29205581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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