View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2572_low_8 (Length: 250)
Name: NF2572_low_8
Description: NF2572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2572_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 38121402 - 38121656
Alignment:
| Q |
10 |
aagaaaatgctacaaaccggtctatgatcagagaatcttgactcgccgcgaacataagataattgttgtaggccacttccataccacaagacacgatcac |
109 |
Q |
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| T |
38121402 |
aagaatatgctacaaaccggtctatgatcagagaatcttgactcgccgcgaacataagataattgttgtaggccacttccataccacaagatacgatcac |
38121501 |
T |
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| Q |
110 |
accttcatgaatagagattttgactagattagaactatataaataacaacattg-----------tttcaaaataacagcatttgccacttcgccaaga- |
197 |
Q |
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| T |
38121502 |
accttcatgaatagagattttgactagattagaactatataaataacaacattgtttcaaaatcctttcaaaataacagcatttgccacttcgccaagaa |
38121601 |
T |
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| Q |
198 |
--aagagtaccatgctggagttcttctcttttgttttgagcgtctatcatcacct |
250 |
Q |
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| T |
38121602 |
agaagagtaccatgctggagttcttctcttttgttttgagcgtctatcatcacct |
38121656 |
T |
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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 31831055 - 31830961
Alignment:
| Q |
22 |
caaaccggtctatgatcagagaatcttgactcgccgcgaacataagataattgttgtaggccacttccataccacaagacacgatcacaccttca |
116 |
Q |
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| T |
31831055 |
caaactggtctatgatcagagaatcttgactcgccacgaacataagataattggcggaggcctcttccatgccataagatccgatcacaccttca |
31830961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 31830823 - 31830780
Alignment:
| Q |
203 |
taccatgctggagttcttctcttttgttttgagcgtctatcatc |
246 |
Q |
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| T |
31830823 |
taccatgctggagttctcctcttttgttttgagtgtatatcatc |
31830780 |
T |
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