View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2573_high_1 (Length: 864)
Name: NF2573_high_1
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2573_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 807; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 18 - 860
Target Start/End: Complemental strand, 10255552 - 10254710
Alignment:
| Q |
18 |
tgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255552 |
tgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcg |
10255453 |
T |
|
| Q |
118 |
aaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10255452 |
aaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggca |
10255353 |
T |
|
| Q |
218 |
taggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10255352 |
taggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggcc |
10255253 |
T |
|
| Q |
318 |
aattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255252 |
aattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtg |
10255153 |
T |
|
| Q |
418 |
ttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255152 |
ttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaac |
10255053 |
T |
|
| Q |
518 |
cagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255052 |
cagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttga |
10254953 |
T |
|
| Q |
618 |
gattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtta |
717 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10254952 |
gattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaaacaccgtta |
10254853 |
T |
|
| Q |
718 |
agtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatcta |
817 |
Q |
| |
|
|||||||| || ||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254852 |
agtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatcta |
10254753 |
T |
|
| Q |
818 |
cggatggttttattggtgggtctatgaaggtgttgatgatgtc |
860 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254752 |
cggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10254710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 34 - 860
Target Start/End: Original strand, 10230289 - 10231115
Alignment:
| Q |
34 |
accggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaag |
133 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
10230289 |
accggagaaccaccgaaaatcatgccaagaggattcatttcaagctgtatatcagcgaacacagcatattttttagtaatggcgaaatcatgaagaaacg |
10230388 |
T |
|
| Q |
134 |
aaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaa |
233 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| | || ||||| |||||||| |
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|
| T |
10230389 |
aaggtcttttcatggagaatactggaacgtcgttatgtttaacaccattcgaatcaaaacggaaataggttaaaaaaggtcgaatgggaccataacggaa |
10230488 |
T |
|
| Q |
234 |
agcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatca |
333 |
Q |
| |
|
||| ||| ||||| |||||| ||| ||||| ||||| || ||||||||||| ||||||| ||||| |||||||||||||| ||||||||||| ||| |
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|
| T |
10230489 |
agcgaaacattcacttgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtca |
10230588 |
T |
|
| Q |
334 |
ccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgc |
433 |
Q |
| |
|
|||||||| || || |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | || ||||||| |
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|
| T |
10230589 |
ccgtttggtgttagtttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgc |
10230688 |
T |
|
| Q |
434 |
cgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgg |
533 |
Q |
| |
|
||||||| || || || || || | || || |||||| | || || |||||||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10230689 |
cgttagatgggttatactgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgg |
10230788 |
T |
|
| Q |
534 |
gataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtga |
633 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||| ||||| |||| || ||||||||||| ||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
10230789 |
gataagttggtgaccagctttgttttcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatga |
10230888 |
T |
|
| Q |
634 |
agcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtg |
733 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10230889 |
agcatgccgtcaccgtcaaagagatggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtg |
10230988 |
T |
|
| Q |
734 |
tacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattgg |
833 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10230989 |
tacctttgatgattacacattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattgg |
10231088 |
T |
|
| Q |
834 |
tgggtctatgaaggtgttgatgatgtc |
860 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
10231089 |
tgggtctatgaaggtgttgataatgtc |
10231115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 22 - 860
Target Start/End: Original strand, 10239057 - 10239895
Alignment:
| Q |
22 |
ggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaaacacagcgtattttttagtaatggcgaaat |
121 |
Q |
| |
|
|||||||| | |||||| ||||||||| ||||||||||||||||||| ||| ||||||| ||||| | |||| |||||||||||| ||||| ||||||| |
|
|
| T |
10239057 |
ggatcggaccttaccggggaaccaccgaaaatcatgtcaagaggattaatttcaagctgtatatcagcgaacaaagcgtatttttttgtaattgcgaaat |
10239156 |
T |
|
| Q |
122 |
catgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaaacggaaataggttaaaaatggtggcatagg |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||||| |||||||||||||||||||||||| ||| | || | |
|
|
| T |
10239157 |
catgaagaaaagaaggtcttttcatggagaaaactggaacgtcattgtgtttaactccatttgaatcaaaacggaaataggttaaaaaaggtcgaatgag |
10239256 |
T |
|
| Q |
222 |
accgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaatt |
321 |
Q |
| |
|
|||||| ||| |||| ||| ||||||||||||| ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
10239257 |
accgtagcggtaagcgaaacattcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctatt |
10239356 |
T |
|
| Q |
322 |
gtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttgg |
421 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
10239357 |
gtttggatatcaccgtttggtgtaactttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttga |
10239456 |
T |
|
| Q |
422 |
ctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccaga |
521 |
Q |
| |
|
|| |||||||||||| ||||| || || |||| || ||||||||| | | || || |||||||| || || | |||||||||||||||||||| |
|
|
| T |
10239457 |
tcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccaga |
10239556 |
T |
|
| Q |
522 |
aaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagatt |
621 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
10239557 |
aaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgatt |
10239656 |
T |
|
| Q |
622 |
gtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgttaagtg |
721 |
Q |
| |
|
||| || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10239657 |
ttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtg |
10239756 |
T |
|
| Q |
722 |
acggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacgga |
821 |
Q |
| |
|
|||| || ||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239757 |
acggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacgga |
10239856 |
T |
|
| Q |
822 |
tggttttattggtgggtctatgaaggtgttgatgatgtc |
860 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239857 |
tggttttattggtgggtctatgaaggtgttgatgatgtc |
10239895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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