View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2573_high_3 (Length: 449)

Name: NF2573_high_3
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2573_high_3
NF2573_high_3
[»] chr3 (6 HSPs)
chr3 (216-424)||(19434968-19435168)
chr3 (208-424)||(28103769-28103977)
chr3 (208-432)||(28068905-28069116)
chr3 (216-424)||(6911360-6911564)
chr3 (208-432)||(28058480-28058691)
chr3 (255-398)||(11200699-11200834)
[»] chr1 (7 HSPs)
chr1 (216-424)||(47050547-47050747)
chr1 (216-424)||(16100706-16100906)
chr1 (216-424)||(14660026-14660226)
chr1 (216-432)||(29289104-29289312)
chr1 (208-432)||(17653420-17653634)
chr1 (216-424)||(14650235-14650435)
chr1 (216-410)||(19657461-19657649)
[»] chr6 (13 HSPs)
chr6 (216-424)||(25478291-25478491)
chr6 (216-424)||(27527203-27527403)
chr6 (216-423)||(33055601-33055797)
chr6 (218-421)||(28040664-28040859)
chr6 (208-432)||(22013924-22014138)
chr6 (216-322)||(33062984-33063090)
chr6 (216-422)||(27650961-27651160)
chr6 (333-430)||(6952290-6952387)
chr6 (349-424)||(33063205-33063277)
chr6 (217-424)||(15970459-15970657)
chr6 (219-392)||(17355375-17355540)
chr6 (327-424)||(27684088-27684185)
chr6 (327-424)||(27691407-27691504)
[»] chr5 (4 HSPs)
chr5 (208-432)||(5519498-5519712)
chr5 (218-432)||(42785455-42785658)
chr5 (216-395)||(15598659-15598829)
chr5 (333-390)||(27198374-27198431)
[»] chr4 (10 HSPs)
chr4 (216-424)||(4763524-4763727)
chr4 (269-424)||(27561170-27561317)
chr4 (334-424)||(11512835-11512925)
chr4 (208-273)||(27561332-27561397)
chr4 (359-430)||(8164473-8164542)
chr4 (335-391)||(5358666-5358722)
chr4 (216-308)||(11512948-11513039)
chr4 (218-308)||(5358734-5358824)
chr4 (117-163)||(40383358-40383404)
chr4 (269-385)||(54351969-54352078)
[»] chr2 (6 HSPs)
chr2 (208-432)||(44324032-44324246)
chr2 (269-424)||(45332676-45332823)
chr2 (217-298)||(2588117-2588198)
chr2 (208-307)||(808810-808909)
chr2 (216-273)||(45331962-45332019)
chr2 (219-424)||(31713836-31714032)
[»] chr8 (7 HSPs)
chr8 (216-432)||(18982382-18982589)
chr8 (218-432)||(4706677-4706877)
chr8 (333-421)||(26340512-26340602)
chr8 (334-424)||(28603144-28603234)
chr8 (220-322)||(26917464-26917567)
chr8 (208-298)||(15924891-15924982)
chr8 (356-430)||(15925033-15925107)
[»] scaffold0406 (1 HSPs)
scaffold0406 (216-424)||(3615-3812)
[»] scaffold0438 (2 HSPs)
scaffold0438 (218-422)||(7687-7884)
scaffold0438 (333-421)||(10673-10763)
[»] chr7 (4 HSPs)
chr7 (334-410)||(36264288-36264365)
chr7 (208-307)||(28803513-28803613)
chr7 (348-428)||(29467028-29467106)
chr7 (356-424)||(28803653-28803721)
[»] scaffold0007 (1 HSPs)
scaffold0007 (216-424)||(60505-60708)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 19434968 - 19435168
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  19434968 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 19435067  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    | |||||        |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  19435068 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 19435159  T
Q  416 atttttata 424  Q
    |||||||||    
T  19435160 atttttata 19435168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 208 - 424
Target Start/End: Original strand, 28103769 - 28103977
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||| ||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  28103769 ttaagcctgatttttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttca 28103868  T
Q  308 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 407  Q
    |||||||||        | |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||    
T  28103869 cctcttgac--------gacattgagattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgatggtgaa 28103960  T
Q  408 tttattatatttttata 424  Q
    |||||||||||||||||    
T  28103961 tttattatatttttata 28103977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 28069116 - 28068905
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28069116 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28069017  T
Q  308 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 407  Q
    | |||||||        | |||||||||||||  ||| | ||||||||||||||| ||||||||||||||||||||||||||||||    ||||| |||     
T  28069016 cttcttgac--------gacattgaaattttg--atagtcttatttggtttgatagatttacaaagttttatgaattttcatggta---ctgattgtgag 28068930  T
Q  408 tttattatatttttatatggttact 432  Q
    ||||||||||||||||| |||||||    
T  28068929 tttattatatttttatacggttact 28068905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 216 - 424
Target Start/End: Complemental strand, 6911564 - 6911360
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggttt-cacctcttg 314  Q
    ||||||||||||| ||||| | || || |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||    
T  6911564 gatttttatattctatttggacttgattatctcgattctttttcattataatcgatttatatattttctttaaagttgtggatttggttttcacctcttg 6911465  T
Q  315 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttatta 414  Q
    || ||     | |||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  6911464 acgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttatta 6911370  T
Q  415 tatttttata 424  Q
    ||||||||||    
T  6911369 tatttttata 6911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 28058691 - 28058480
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28058691 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28058592  T
Q  308 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 407  Q
    | |||||||        | |||||||||| ||  ||| | ||||||||||||||| ||||||||||||||||||||||||||||||    ||||| |||     
T  28058591 cttcttgac--------gacattgaaattctg--atagtcttatttggtttgatagatttacaaagttttatgaattttcatggta---ctgattgtgag 28058505  T
Q  408 tttattatatttttatatggttact 432  Q
    ||||||||||||||||| |||||||    
T  28058504 tttattatatttttatacggttact 28058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 398
Target Start/End: Original strand, 11200699 - 11200834
Alignment:
Q  255 ttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttg 354  Q
    ||||||||||| ||||||| ||||||  ||||| |||| | ||| |||||||||||||| || |||||        | |||||||||||| | |||||||    
T  11200699 ttttcattatactcgatttatatatttcctttatagttattgatttggtttcacctctttacgacatt--------ggaattttgatatagttttatttg 11200790  T
Q  355 gtttgataaatttacaaagttttatgaattttcatggtatactt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11200791 gtttgataaatttacaaagttttatgaattttcatggtatactt 11200834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 216 - 424
Target Start/End: Complemental strand, 47050747 - 47050547
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  47050747 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 47050648  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    | |||||        |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  47050647 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 47050556  T
Q  416 atttttata 424  Q
    |||||||||    
T  47050555 atttttata 47050547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 16100706 - 16100906
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  16100706 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 16100805  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  16100806 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattctcatggtacacttgattgtgaatttattat 16100897  T
Q  416 atttttata 424  Q
    |||||||||    
T  16100898 atttttata 16100906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 14660026 - 14660226
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14660026 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14660125  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  14660126 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattat 14660217  T
Q  416 atttttata 424  Q
    |||||||||    
T  14660218 atttttata 14660226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 216 - 432
Target Start/End: Complemental strand, 29289312 - 29289104
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    |||| |||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||    
T  29289312 gattgttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttcacctcttga 29289213  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    | |||||        ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  29289212 cgacatt--------gaaattttgttatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 29289121  T
Q  416 atttttatatggttact 432  Q
    ||||||||| |||||||    
T  29289120 atttttatacggttact 29289104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 17653634 - 17653420
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  17653634 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 17653535  T
Q  308 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 407  Q
    |||||||||        | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  17653534 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 17653445  T
Q  408 tttattatatttttatatggttact 432  Q
     |||||||||||||||| |||||||    
T  17653444 gttattatatttttatacggttact 17653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 14650235 - 14650435
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14650235 gatttttatattctatttggatttgactatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14650334  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||||||||||    
T  14650335 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattaaaaagttttatgaattatcatggtacacttgattgtgaatttattat 14650426  T
Q  416 atttttata 424  Q
    |||||||||    
T  14650427 atttttata 14650435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 410
Target Start/End: Complemental strand, 19657649 - 19657461
Alignment:
Q  216 gatttttatattcaatttgaattta-atcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg 314  Q
    ||||||||||||| ||||| ||||  || || || |||||||||||||||    |||||||||||| ||||||| |||| |||| ||| || |||||||     
T  19657649 gatttttatattctatttggatttctattatttcaattccttttcattatgtgtgatttctatattttctttaaggttgcggatttgggttgacctcttt 19657550  T
Q  315 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg-gtatacttgattatgaattt 410  Q
    ||||||||  |        |||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||  || |||||||| |||||||    
T  19657549 acaacattggg--------atttcgatataatcttatttggtttgataaatttacaaagttttttgaattttcatgtatacacttgattgtgaattt 19657461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 216 - 424
Target Start/End: Complemental strand, 25478491 - 25478291
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  25478491 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 25478392  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    |        | |||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||    
T  25478391 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacgaagttttatgaattttcatggtacacttgattgtgaatttattat 25478300  T
Q  416 atttttata 424  Q
    |||||||||    
T  25478299 atttttata 25478291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 27527203 - 27527403
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  27527203 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 27527302  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  27527303 c--------gacattgaaattttgatatagtcttatttggtttgataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattat 27527394  T
Q  416 atttttata 424  Q
    |||||||||    
T  27527395 atttttata 27527403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 216 - 423
Target Start/End: Original strand, 33055601 - 33055797
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33055601 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33055700  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    |||        |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||   || ||||||||||||    
T  33055701 caa--------cattgaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacact---ttgtgaatttattat 33055789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 218 - 421
Target Start/End: Original strand, 28040664 - 28040859
Alignment:
Q  218 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 317  Q
    ||||||||||  ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||     
T  28040664 tttttatattatatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttgacg 28040763  T
Q  318 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 417  Q
    |||||        |||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  28040764 acatt--------gaaattttgatatagtcttatttagtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatat 28040855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 22013924 - 22014138
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  22013924 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 22014023  T
Q  308 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 407  Q
    |||||||||        | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  22014024 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 22014113  T
Q  408 tttattatatttttatatggttact 432  Q
    ||||||||||||||||| |||||||    
T  22014114 tttattatatttttatacggttact 22014138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 33062984 - 33063090
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33062984 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33063083  T
Q  316 caacatt 322  Q
    | |||||    
T  33063084 cgacatt 33063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 216 - 422
Target Start/End: Original strand, 27650961 - 27651160
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    |||| ||||| || ||||| |||| || || | |||||||||||||||||   ||||||||||||  |||||||||||| ||| ||| ||||||||||      
T  27650961 gattgttatagtctatttggatttgattatttggattccttttcattatacatgatttctatatttcctttaaagttgttgatttggattcacctcttac 27651060  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttatt 413  Q
     ||         ||||| ||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||  ||||||| ||||||||||    
T  27651061 gaa---------attgatattttgatatagtattatttgatttgataaatttacaaaattttctgaattttcatggtatactcttgattgtgaatttatt 27651151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 6952290 - 6952387
Alignment:
Q  333 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggtta 430  Q
    |||||||||||| | ||||||||||||||||||| |||||| |||  |||||||||||||| |||| ||| ||| ||||||| ||||||||| |||||    
T  6952290 aattttgatatagtcttatttggtttgataaattcacaaagattttcgaattttcatggtacactttattgtgagtttattacatttttatacggtta 6952387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 33063205 - 33063277
Alignment:
Q  349 tatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||   || |||||||||||||||||||||    
T  33063205 tatttggtttgataaaattacaaagttttatgaattttcatggtacact---ttgtgaatttattatatttttata 33063277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 424
Target Start/End: Complemental strand, 15970657 - 15970459
Alignment:
Q  217 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgac 316  Q
    |||||||||||| ||||| |||| || || ||||| ||||||||||||    |||||||||||| |  |||||||||||||| ||| ||||||| |  ||    
T  15970657 atttttatattcgatttggatttgattatttcgat-ccttttcattatggatgatttctatattctaattaaagttgtggatttgggttcacctttgtac 15970559  T
Q  317 aacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattata 416  Q
            | |||||  |||||||| || | ||||||||||||||||| ||||||||||||  ||||||||| |||| ||| |||||||| || ||||||    
T  15970558 --------gacattgcgattttgatgtagtcttatttggtttgataaagttacaaagttttccgaattttcaaggtacactagattatgagttgattata 15970467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 392
Target Start/End: Original strand, 17355375 - 17355540
Alignment:
Q  219 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 317  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||||||||||||| ||| ||||| || | ||     
T  17355375 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaaagttgtggatttgggttcacttccttac- 17355472  T
Q  318 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggt 392  Q
           | ||||| |||||| ||||| | ||||||||||||||||| |||| | |||||  |||||||||||||    
T  17355473 -------gacattggaattttaatatacttttatttggtttgataaagttacgatgttttccgaattttcatggt 17355540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 27684088 - 27684185
Alignment:
Q  327 cattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    ||||| |||||| ||||| | |||||||||||||| || |||| | |||||  |||||||||||| | ||| |||| ||| ||||| |||||||||||    
T  27684088 cattggaattttaatatacttttatttggtttgattaagttacgatgttttccgaattttcatggcacactcgattgtgagtttatcatatttttata 27684185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 27691407 - 27691504
Alignment:
Q  327 cattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    ||||| |||||| ||||| | |||||||||||||| || |||  | |||||  |||||||||||| | ||| |||| ||| ||||| |||||||||||    
T  27691407 cattggaattttaatatacttttatttggtttgattaagttaagatgttttccgaattttcatggcacactcgattgtgagtttatcatatttttata 27691504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 5519712 - 5519498
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  5519712 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 5519613  T
Q  308 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 407  Q
    ||||||||         | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  5519612 cctcttga--------agacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 5519523  T
Q  408 tttattatatttttatatggttact 432  Q
    ||||||||||||||||| |||||||    
T  5519522 tttattatatttttatacggttact 5519498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 218 - 432
Target Start/End: Original strand, 42785455 - 42785658
Alignment:
Q  218 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 317  Q
    ||||||||||  ||||| |||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||     
T  42785455 tttttatattttatttggatttgattatctcgattcattttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgac- 42785553  T
Q  318 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 417  Q
           | ||||||||||  |  ||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| || | || ||||||    
T  42785554 -------gacattgaaattccg--atagtcttgtttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtg-agttgttatat 42785643  T
Q  418 ttttatatggttact 432  Q
    ||||||| |||||||    
T  42785644 ttttatacggttact 42785658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 395
Target Start/End: Original strand, 15598659 - 15598829
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || || ||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| |||||||||| |    
T  15598659 gatttttatattctatttggatttgattatttcgattccttt-cattatacgcgatttctatattttctttaaagttgtggatttggattcacctcttta 15598757  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata 395  Q
    |        | |||||| ||||||||||| | |||||| |||||||||||||| || |||||||||||||||||| ||||    
T  15598758 c--------gacattgagattttgatatagtcttatttcgtttgataaatttaaaaggttttatgaattttcatgttata 15598829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 27198431 - 27198374
Alignment:
Q  333 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg 390  Q
    |||||||||||| |  |||||||||| |||||||||||||||||| ||||||||||||    
T  27198431 aattttgatatagtcatatttggtttaataaatttacaaagttttctgaattttcatg 27198374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 216 - 424
Target Start/End: Complemental strand, 4763727 - 4763524
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  4763727 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 4763628  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    | ||     | |||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  4763627 cgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttattat 4763533  T
Q  416 atttttata 424  Q
    |||||||||    
T  4763532 atttttata 4763524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 269 - 424
Target Start/End: Complemental strand, 27561317 - 27561170
Alignment:
Q  269 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 368  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||||||||| | ||||||||||||||||| |||    
T  27561317 gatttatatattttctttaaagttgtggatttggtttcacctcttgacgacatt--------gaaattttgatatagtcttatttggtttgataaaatta 27561226  T
Q  369 caaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27561225 caaagttttatgaattttcatggtacacttgattgtgaatttattatatttttata 27561170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 11512925 - 11512835
Alignment:
Q  334 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    ||||||| ||| | ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||    
T  11512925 attttgacatagtcttatttggtttgataaagttacaaagttttccgaattttcatggtatacttgattgtgagtttattatatttttata 11512835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 27561397 - 27561332
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 273  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  27561397 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgattt 27561332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 430
Target Start/End: Complemental strand, 8164542 - 8164473
Alignment:
Q  359 gataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggtta 430  Q
    |||||| |||||||  ||| ||||||||||||||| |||||||| | ||||||||||||||||||| |||||    
T  8164542 gataaaattacaaa--tttgtgaattttcatggtacacttgattgtaaatttattatatttttatacggtta 8164473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 5358722 - 5358666
Alignment:
Q  335 ttttgatataatattatttggtttgataaatttacaaagttttatgaattttcatgg 391  Q
    |||||||||| | || |||||||| ||||||||| |||||||||||| |||||||||    
T  5358722 ttttgatatagtcttgtttggtttaataaatttataaagttttatgagttttcatgg 5358666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 11513039 - 11512948
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 308  Q
    ||||||||||||| ||||| |||| || || ||||||||||||||||||    ||||| | |||| ||||||||||||||||| ||| |||||    
T  11513039 gatttttatattctatttggatttgattatttcgattccttttcattatgcatgattt-tttattttctttaaagttgtggatttgggttcac 11512948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 5358824 - 5358734
Alignment:
Q  218 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 308  Q
    ||||||||||| ||||| |||| || || |  ||||||| |||||||| || |||||||||||  ||||||||| || ||| |||||||||    
T  5358824 tttttatattctatttggatttgattattttcattccttctcattatactctatttctatatttgctttaaagtggtagatttggtttcac 5358734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 40383358 - 40383404
Alignment:
Q  117 aacatgacagatattttgcaacatgagatattaaatttggctttcaa 163  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  40383358 aacatgagagatatttttcaatatgagatatttaatttggctttcaa 40383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 385
Target Start/End: Complemental strand, 54352078 - 54351969
Alignment:
Q  269 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 368  Q
    |||||||||| |||||||||| |||||||| ||||||||||| ||       ||  |  |||| |||||||||||  | ||||||||||| |||||||||    
T  54352078 gatttctatactatctttaaaattgtggatttggtttcacctttt-------ttacgatattggaattttgatatggtcttatttggtttaataaattta 54351986  T
Q  369 caaagttttatgaattt 385  Q
    || |||||| |||||||    
T  54351985 cacagttttctgaattt 54351969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 432
Target Start/End: Original strand, 44324032 - 44324246
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  44324032 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 44324131  T
Q  308 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 407  Q
    |||||||||        | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  44324132 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 44324221  T
Q  408 tttattatatttttatatggttact 432  Q
    ||||||||||||||||| |||||||    
T  44324222 tttattatatttttatacggttact 44324246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 269 - 424
Target Start/End: Original strand, 45332676 - 45332823
Alignment:
Q  269 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 368  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||||||||| | ||||||||||||||||| |||    
T  45332676 gatttatatattttctttaaagttgtggatttggtttcacctcttgacgacatt--------gaaattttgatatagtcttatttggtttgataaaatta 45332767  T
Q  369 caaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  45332768 caaagttttatgaattttcatggtacacttgattgtgaatttattatatttttata 45332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 2588117 - 2588198
Alignment:
Q  217 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggat 298  Q
    |||||||||||| ||||| |||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2588117 atttttatattctatttggatttgattatcttgattccttttcattataatcgatttatatattttctttaaagttgtggat 2588198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 808909 - 808810
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 307  Q
    ||||||| || |||||||||| ||||| |||| || |||||||||| |||||||||||  || |||||||||| |||||||| |||||||| ||| ||||    
T  808909 ttaagtccgacttttatattctatttggatttgattatctcgattctttttcattatacgcggtttctatattttctttaaaattgtggatttgggttca 808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 45331962 - 45332019
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 273  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  45331962 gatttttatattctatttggatttgattatctcgattccttttcattataatcgattt 45332019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 424
Target Start/End: Original strand, 31713836 - 31714032
Alignment:
Q  219 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 317  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||| ||||||||| ||| ||||| || | |||    
T  31713836 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaa-gttgtggatttgggttcacttccttaca 31713933  T
Q  318 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 417  Q
    |||||        | |||||| ||||| | |||||||||||||| || |||| | |||||  |||||||||||| | ||| |||| ||| ||||| ||||    
T  31713934 acatt--------ggaattttaatatacttttatttggtttgattaagttacgatgttttccgaattttcatggcacactcgattgtgagtttatcatat 31714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 216 - 432
Target Start/End: Original strand, 18982382 - 18982589
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| ||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||    
T  18982382 gatttttatattctattgga-tttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggattgggtttcacctcttga 18982480  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    | |||||        |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||| |||||||    
T  18982481 cgacatt--------gaaattttgacatagtcttatttggtttgataaaattacaaagttttatgaatttccatggtacacttgattgtgaacttattat 18982572  T
Q  416 atttttatatggttact 432  Q
    |||||||||| ||||||    
T  18982573 atttttatatagttact 18982589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 218 - 432
Target Start/End: Complemental strand, 4706877 - 4706677
Alignment:
Q  218 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 317  Q
    ||||||||||  ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  4706877 tttttatattttatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgaca 4706778  T
Q  318 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 417  Q
    |        |||||||||     |||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| || | || ||||||    
T  4706777 a--------cattgaaat-----tatagtcttgtttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtg-agttgttatat 4706692  T
Q  418 ttttatatggttact 432  Q
    ||||||| |||||||    
T  4706691 ttttatacggttact 4706677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 333 - 421
Target Start/End: Complemental strand, 26340602 - 26340512
Alignment:
Q  333 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattatattttt 421  Q
    |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||||||||    
T  26340602 aattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatactcttgattgtgagtttattatattttt 26340512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 28603234 - 28603144
Alignment:
Q  334 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    ||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||| | |||||  ||| ||||| |||||||||||    
T  28603234 attttgatatacttttatttggtttgataaagttacaaagttttctgaattttcatggtacatttgatcgtgagtttatcatatttttata 28603144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 26917567 - 26917464
Alignment:
Q  220 tttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaa 318  Q
    ||||||||| ||||| |||| || || |||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| ||||| |||| || |    
T  26917567 tttatattctatttggatttgattatttcgattcctttttcattatacgcgatttctatattttctttaaagttgtggatttgggttcacttctttacga 26917468  T
Q  319 catt 322  Q
    ||||    
T  26917467 catt 26917464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 15924891 - 15924982
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggat 298  Q
    ||||||| |||||||| |||| ||||| |||| || || |||||||||||| || ||||  ||||||||||||| |||||||| ||||||||    
T  15924891 ttaagtccgatttttacattctatttggatttgattatttcgattcctttttcactatatgcgatttctatattttctttaaaattgtggat 15924982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 15925033 - 15925107
Alignment:
Q  356 tttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggtta 430  Q
    ||||||||||||| |||| ||| ||||||||||  ||| ||||| ||  || ||||||||||||||||| |||||    
T  15925033 tttgataaatttataaagatttctgaattttcacagtacacttgtttgagagtttattatatttttatacggtta 15925107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 3615 - 3812
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 315  Q
    ||||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  3615 gatttttatattctatgtgaatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttagtttcacctcttga 3714  T
Q  316 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 415  Q
    |        | |||||||||||    ||| | ||||||||||||||||| |||| ||||||||||||||||||||||| | |||||| ||||||||||||    
T  3715 c--------gacattgaaattt---gatagtcttatttggtttgataaaattacgaagttttatgaattttcatggtacatttgattgtgaatttattat 3803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 218 - 422
Target Start/End: Complemental strand, 7884 - 7687
Alignment:
Q  218 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 317  Q
    |||| |||||| ||||| |||| || || ||||||| ||||||| |||  |  |||||||||| ||||||||||||| ||| ||| ||||||||||  ||    
T  7884 ttttcatattctatttggatttgattatttcgattcattttcatcatacccagtttctatattttctttaaagttgttgatttggattcacctcttacca 7785  T
Q  318 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattat 415  Q
             ||||| |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||    
T  7784 ---------cattggaattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatattcttgattgtgagtttattat 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 333 - 421
Target Start/End: Complemental strand, 10763 - 10673
Alignment:
Q  333 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattatattttt 421  Q
    |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||||||||    
T  10763 aattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatactcttgattgtgagtttattatattttt 10673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 36264365 - 36264288
Alignment:
Q  334 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg-gtatacttgattatgaattt 410  Q
    |||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||  || |||||||| |||||||    
T  36264365 atttcgatataatcttatttggtttgataaatttataaagttttctgaattttcatgtatacacttgattgtgaattt 36264288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 28803513 - 28803613
Alignment:
Q  208 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttc 306  Q
    |||||||  ||||||||| || ||||| |||| || || |||||||||||| |||||||  ||||||||||||| |||||||| |||||||| ||| |||    
T  28803513 ttaagtccaatttttatactctatttggatttgattatttcgattcctttttcattatatgcgatttctatattctctttaaaattgtggatttgggttc 28803612  T
Q  307 a 307  Q
    |    
T  28803613 a 28803613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 29467106 - 29467028
Alignment:
Q  348 ttatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggt 428  Q
    ||||||| || |||||||||| |||  ||||||||||| ||||||| |||||||| |  |||||||| ||||||| |||||    
T  29467106 ttatttgattggataaatttataaa--tttatgaatttccatggtacacttgattgttgatttattaaatttttacatggt 29467028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 28803653 - 28803721
Alignment:
Q  356 tttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 424  Q
    ||||||||||||| |||| ||| |||||||||| |||  ||||| ||  || |||||||||||||||||    
T  28803653 tttgataaatttataaagatttctgaattttcacggtgcacttgtttgggagtttattatatttttata 28803721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 60505 - 60708
Alignment:
Q  216 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg- 314  Q
    |||| |||||||| ||||| |||| || || ||||||||||||||||||  | |||||| ||||| |||||||||||| |||| ||| ||||||| ||      
T  60505 gattgttatattctatttggatttgattatttcgattccttttcattatgcttgatttcgatattttctttaaagttgcggatttggattcacctttttt 60604  T
Q  315 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaag--ttttatgaattttcatggtatacttgattatgaatttat 412  Q
    || |||||| ||       ||||||||||| | |||||||||||||||||  ||| |||  ||||| |||||||||||  | |||||||  ||| |||||    
T  60605 acgacattt-gt-------attttgatatagtcttatttggtttgataaaactaccaagttttttacgaattttcatgagacacttgatcgtgagtttat 60696  T
Q  413 tatatttttata 424  Q
     |||||||||||    
T  60697 aatatttttata 60708  T

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