View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2573_high_5 (Length: 287)

Name: NF2573_high_5
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2573_high_5
NF2573_high_5
[»] chr1 (12 HSPs)
chr1 (22-287)||(17653129-17653393)
chr1 (95-287)||(47050324-47050512)
chr1 (129-279)||(17478575-17478723)
chr1 (79-272)||(263031-263221)
chr1 (218-287)||(29288999-29289068)
chr1 (204-284)||(14650472-14650553)
chr1 (204-284)||(14660263-14660344)
chr1 (216-287)||(16100941-16101013)
chr1 (198-264)||(17981719-17981786)
chr1 (216-265)||(19657319-19657369)
chr1 (216-263)||(16104423-16104471)
chr1 (95-179)||(29288023-29288106)
[»] chr6 (18 HSPs)
chr6 (23-287)||(22014165-22014427)
chr6 (130-287)||(28040898-28041055)
chr6 (124-287)||(25478096-25478256)
chr6 (140-272)||(15970279-15970411)
chr6 (194-287)||(17357707-17357801)
chr6 (194-287)||(27684220-27684314)
chr6 (194-287)||(27691539-27691633)
chr6 (20-270)||(16693898-16694141)
chr6 (204-287)||(6952415-6952498)
chr6 (189-287)||(27651197-27651295)
chr6 (204-272)||(27527462-27527531)
chr6 (204-287)||(9815056-9815140)
chr6 (216-287)||(33055833-33055905)
chr6 (20-73)||(14011441-14011494)
chr6 (216-287)||(33063312-33063384)
chr6 (194-272)||(13141996-13142075)
chr6 (216-272)||(30130552-30130609)
chr6 (95-179)||(25477853-25477936)
[»] chr2 (11 HSPs)
chr2 (23-287)||(44324273-44324535)
chr2 (194-287)||(31714067-31714161)
chr2 (194-287)||(39154633-39154727)
chr2 (189-287)||(45332858-45332956)
chr2 (189-287)||(808579-808677)
chr2 (204-287)||(4406356-4406440)
chr2 (204-287)||(9311064-9311148)
chr2 (216-272)||(10416155-10416212)
chr2 (216-272)||(4698113-4698170)
chr2 (20-53)||(35110800-35110833)
chr2 (25-66)||(45333072-45333113)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-287)||(60742-61002)
[»] scaffold0012 (2 HSPs)
scaffold0012 (20-179)||(233320-233479)
scaffold0012 (193-270)||(182811-182889)
[»] chr4 (9 HSPs)
chr4 (95-287)||(27560947-27561135)
chr4 (189-279)||(51533841-51533930)
chr4 (189-279)||(18694128-18694217)
chr4 (205-287)||(27733593-27733675)
chr4 (194-271)||(54351775-54351852)
chr4 (204-287)||(4763405-4763489)
chr4 (199-287)||(5358535-5358623)
chr4 (189-287)||(11512701-11512801)
chr4 (20-73)||(5358363-5358415)
[»] chr3 (10 HSPs)
chr3 (124-287)||(19435203-19435363)
chr3 (204-287)||(28058369-28058453)
chr3 (204-287)||(28068794-28068878)
chr3 (199-287)||(17954693-17954781)
chr3 (204-287)||(28104012-28104096)
chr3 (201-262)||(23397923-23397984)
chr3 (205-287)||(6911242-6911325)
chr3 (189-263)||(9436001-9436076)
chr3 (216-272)||(5705490-5705547)
chr3 (20-66)||(11201006-11201052)
[»] scaffold0406 (1 HSPs)
scaffold0406 (95-287)||(3847-4035)
[»] chr5 (4 HSPs)
chr5 (189-287)||(15599019-15599117)
chr5 (189-287)||(5519373-5519471)
chr5 (189-287)||(42785685-42785783)
chr5 (206-270)||(27198198-27198263)
[»] chr8 (7 HSPs)
chr8 (189-287)||(18982616-18982714)
chr8 (189-287)||(26917241-26917338)
chr8 (189-287)||(4706552-4706650)
chr8 (200-265)||(26340387-26340452)
chr8 (199-287)||(28603022-28603110)
chr8 (204-287)||(15925135-15925219)
chr8 (20-66)||(18982836-18982882)
[»] chr7 (5 HSPs)
chr7 (199-283)||(36264128-36264212)
chr7 (204-287)||(28803754-28803838)
chr7 (204-278)||(44060056-44060131)
chr7 (20-80)||(15818455-15818515)
chr7 (198-270)||(29466909-29466983)
[»] scaffold0002 (3 HSPs)
scaffold0002 (188-263)||(406869-406944)
scaffold0002 (188-271)||(412872-412955)
scaffold0002 (199-270)||(424255-424326)
[»] scaffold0713 (1 HSPs)
scaffold0713 (204-287)||(911-995)
[»] scaffold0438 (2 HSPs)
scaffold0438 (200-287)||(7563-7650)
scaffold0438 (200-265)||(10548-10613)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 17653129 - 17653393
Alignment:
Q  22 aaaacatcctagacttccaaatagttgcagatacatcaattgacattaaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatg 121  Q
    |||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  17653129 aaaacatcatagactcccaaatagctgcagatacatcaattgacactaaaatatacataaataaaagagtcggccatcaaggaggcctaccaacaaaatg 17653228  T
Q  122 tcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggactta 221  Q
    | || | |||||||||||||||||||||||||||||||| || ||||||||||||||||        ||||||| |||||||||||||  ||||||||||    
T  17653229 tgacgccgctgagcttcgagtctactagcagctttctactcagctgcttgaaaatctggaaaaaaa-atagaaagagaaagagtaagtcgcaaggactta 17653327  T
Q  222 gtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  17653328 gtgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttattcttctc 17653393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 287
Target Start/End: Original strand, 47050324 - 47050512
Alignment:
Q  95 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaa 194  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||         ||||||    
T  47050324 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa---atagaa 47050419  T
Q  195 aaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  47050420 aataaaagagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctc 47050512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 279
Target Start/End: Original strand, 17478575 - 17478723
Alignment:
Q  129 gctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagag 228  Q
    ||||| ||| |||||||||||||||| || ||  | ||||||||||||||||        |||||||| || ||||||||| ||||||||||||||||||    
T  17478575 gctgaactttgagtctactagcagctctccacttagctgcttgaaaatctggaaaaaa--atagaaaatgagagagtaagtcacaaggacttagtgagag 17478672  T
Q  229 acaacaactaccaccaactaaaagggaaacacacaagggcacgactattta 279  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||    
T  17478673 acaacaaccaccaccaactagaagggaaacgcacaagggcacgattattta 17478723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 263221 - 263031
Alignment:
Q  79 taagtaaaagagtcggccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatct 178  Q
    |||| |||||||||| ||||||||| |||||||||| ||||||| |||||||||| | | |||||||||||||||||||||| || |||  ||  |||||    
T  263221 taagcaaaagagtcgtccatcaaggtggcctaccaa-aaaatgtgacactgctgaaccttgagtctactagcagctttctactcagctgtgtgggaatct 263123  T
Q  179 ggnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtga-gagacaacaactaccaccaactaaaagggaaacacacaagggcacga 272  Q
    |         |||||||| |||||||||||  ||||||||||||||| ||||||||||| |||||| |||| |||||||||| | | ||||||||    
T  263122 g---aaaaaaatagaaaacgaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacatatatgggcacga 263031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 29288999 - 29289068
Alignment:
Q  218 cttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  29288999 cttagtgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctc 29289068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 14650553 - 14650472
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttattttt 284  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  14650553 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgattattttttttt 14650472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 14660344 - 14660263
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttattttt 284  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  14660344 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgattattttttttt 14660263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 16101013 - 16100941
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| || ||||| ||||||||||||||    
T  16101013 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacatggtcacgattatttatttttctc 16100941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 17981719 - 17981786
Alignment:
Q  198 gaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaa 264  Q
    |||||||||||| |||| |||||| |||| |||||||||  ||||||||||| |||||||||||||||    
T  17981719 gaaagagtaagtcacaaagacttattgaggagacaacaatcaccaccaactagaagggaaacacacaa 17981786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 19657319 - 19657369
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaag 265  Q
    ||||||||||| |||||||||  ||||||||||| ||||||||||||||||    
T  19657319 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacaag 19657369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 16104471 - 16104423
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacaca 263  Q
    ||||||||||| |||||||||  ||||||||||| ||||||||||||||    
T  16104471 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacaca 16104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 29288023 - 29288106
Alignment:
Q  95 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctg 179  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| |||||||||||| |||||||||  | |||||||||||||||    
T  29288023 ccatcaaagaagcctaccaaaaaga-gtgacacagctgaactttgagtctactagctgctttctacttagctgcttgaaaatctg 29288106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 22014427 - 22014165
Alignment:
Q  23 aaacatcctagacttccaaatagttgcagatacatcaattgacattaaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgt 122  Q
    ||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  22014427 aaacatcatagactcccaaatagctgcagatacatcaattgacactaaaatatacataaataaaagagtcggccatcaaggaggcctaccaacaaaatgt 22014328  T
Q  123 cacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttag 222  Q
     || | | |||||||||||||||||||||||||||||| || ||||||||||||||||        ||||||| |||||||||||||  |||||||||||    
T  22014327 gacgccgttgagcttcgagtctactagcagctttctactcagctgcttgaaaatctggaaaaaa--atagaaagagaaagagtaagtcgcaaggacttag 22014230  T
Q  223 tgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  22014229 tgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttattcttctc 22014165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 28041055 - 28040898
Alignment:
Q  130 ctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagaga 229  Q
    |||| ||| |||||||||| |||||| ||||  | |||||||||||||||         ||||||||  ||||||||||| |||||||||||||||||||    
T  28041055 ctgaactttgagtctactaccagcttcctacttagctgcttgaaaatctgaaaaaaaaaatagaaaataaaagagtaagtcacaaggacttagtgagaga 28040956  T
Q  230 caacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  28040955 caacaaccaccaccaactagaagggaaacacacaaggacacgattatttatttttctc 28040898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 287
Target Start/End: Original strand, 25478096 - 25478256
Alignment:
Q  124 acactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttagt 223  Q
    |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||         ||||||||  ||||||||||| |||||||||||||    
T  25478096 acacggctgaactttgagtctactagcagcttcctacgtagctgcttgaaaatctgaaaaaa---atagaaaataaaagagtaagtcacaaggacttagt 25478192  T
Q  224 gagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||||| | |||| |||||||    
T  25478193 gagagacaacaaccactaccaactagaagggaaacacacaagggcacgattttttacttttctc 25478256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 272
Target Start/End: Original strand, 15970279 - 15970411
Alignment:
Q  140 agtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactac 239  Q
    |||||||||||||||||||||  ||||||||| |||||||         ||||||||  ||||| ||||| |||||||||||||||||||||||||| ||    
T  15970279 agtctactagcagctttctacttaactgcttggaaatctgaagaaaataatagaaaataaaagaataagtcacaaggacttagtgagagacaacaaccac 15970378  T
Q  240 caccaactaaaagggaaacacacaagggcacga 272  Q
    ||||||||| ||||| |||||||||||||||||    
T  15970379 caccaactagaagggcaacacacaagggcacga 15970411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 17357801 - 17357707
Alignment:
Q  194 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||| |||||||||||||||||| ||||||||||||||    
T  17357801 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaaggaaaacacacaagggcacgattatttatttttctc 17357707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 27684314 - 27684220
Alignment:
Q  194 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| |||||| ||||||||||||||    
T  27684314 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagagcacgattatttatttttctc 27684220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 27691633 - 27691539
Alignment:
Q  194 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| |||||| ||||||||||||||    
T  27691633 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagagcacgattatttatttttctc 27691539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 16693898 - 16694141
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagatacatcaattgacattaaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaa 119  Q
    |||| |||| ||||||||| |||||||||||||||||     ||||  ||| || |||||||| |||||||||| ||||||||| ||||||| || ||||    
T  16693898 ataagacattctagacttc-aaatagttgcagatacac----tgactgtaatatatacataagcaaaagagtcgtccatcaaggtggcctacaaaaaaaa 16693992  T
Q  120 -tgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggac 218  Q
     ||| |||||||||| | | |||||||||| ||||||||||| || |||  ||  ||||||         |||||||| |||||||||||  || |||||    
T  16693993 atgtgacactgctgaaccttgagtctactaccagctttctactcagctgtatgtgaatctg----aaaaaatagaaaatgaaagagtaagccacgaggac 16694088  T
Q  219 ttagtga-gagacaacaactaccaccaactaaaagggaaacacacaagggcac 270  Q
    ||||||| ||||||||||| |||||| |||| |||| ||||||||| ||||||    
T  16694089 ttagtgaggagacaacaacaaccaccgactagaaggaaaacacacatgggcac 16694141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 6952498 - 6952415
Alignment:
Q  204 gtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||||||||||||||||||||||||| ||||| || || |||| |||||||||||||||||| |||||  |||||||    
T  6952498 gtaagtcacaaggacttagtgagagacaacaaccaccactaagtagaaggaaaacacacaagggcacgattatttccttttctc 6952415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 27651295 - 27651197
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||| ||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||| || |||| | |||||  |||||||    
T  27651295 atagaaaataaaatagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaaaggaaacacacgagagcacaattattttattttctc 27651197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 27527531 - 27527462
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacga 272  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||    
T  27527531 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacga 27527462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 9815140 - 9815056
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| ||||||||||| |||||||||| || |||||||| |||||||||||||||| |||||| |||||  |||||||    
T  9815140 gtaagtcacaaagacttagtgagcagacaacaaccactaccaactagaagggaaacacacaagagcacgattattttcttttctc 9815056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 33055905 - 33055833
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||| |||||||||  |||||||| || |||||||||||| | |||||||| ||||||||||||||    
T  33055905 gacttagtgaggagacaacaatcaccaccaaatagaagggaaacacatatgggcacgattatttatttttctc 33055833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 14011494 - 14011441
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagatacatcaattgacattaaaat 73  Q
    |||| |||||||||||| |||||||| ||||||||||||||| |||||| ||||    
T  14011494 ataacacatcctagactaccaaatagctgcagatacatcaatggacattgaaat 14011441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 33063384 - 33063312
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||| |||||||||  |||||||| || || |||||||| || |||||||| ||||||||||||||    
T  33063384 gacttagtgaggagacaacaatcaccaccaaatagaatggaaacacgcatgggcacgattatttatttttctc 33063312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 13141996 - 13142075
Alignment:
Q  194 aaaagaaagagtaagttacaaggacttagtga-gagacaacaactaccaccaactaaaagggaaacacacaagggcacga 272  Q
    |||||||||||||||  ||||||||||||||| ||||||||||| |||||  || | ||||| |||||||  ||||||||    
T  13141996 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccactgacaagaagggtaacacacttgggcacga 13142075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 30130609 - 30130552
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacga 272  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| | ||||||    
T  30130609 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacatgagcacga 30130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 25477853 - 25477936
Alignment:
Q  95 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctg 179  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||    
T  25477853 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacgtagctgcttgaaaatctg 25477936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 44324535 - 44324273
Alignment:
Q  23 aaacatcctagacttccaaatagttgcagatacatcaattgacattaaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgt 122  Q
    ||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  44324535 aaacatcatagactcccaaatagctgcagatacatcaattgacactaaaatatacataaataaaagagtcggccatcaaggaggcctaccaacaaaatgt 44324436  T
Q  123 cacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttag 222  Q
     || | | |||||||||||||||||||||||||||||| || ||||||||||||||||        ||||||| |||||||||||||  |||||||||||    
T  44324435 gacgccgttgagcttcgagtctactagcagctttctactcagctgcttgaaaatctggaaaaaa--atagaaagagaaagagtaagtcgcaaggacttag 44324338  T
Q  223 tgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  44324337 tgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttattcttctc 44324273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 31714161 - 31714067
Alignment:
Q  194 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  31714161 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagggcacgattatttatttttctc 31714067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 39154633 - 39154727
Alignment:
Q  194 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| |||||| ||||||||||||||    
T  39154633 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagagcacgattatttatttttctc 39154727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 45332956 - 45332858
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| |||||| |||||||    
T  45332956 atagaaaataaaagagtaagtcacgaggacttagtgagagacaacaaccactaccaactagaagggaaacacacaagggaacgattatttacttttctc 45332858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 808579 - 808677
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  ||||||||||| | ||||||| |||||| |||||| || ||| |||||||    
T  808579 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaactagaggggaaacccacaagagcacgattagttacttttctc 808677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 4406440 - 4406356
Alignment:
Q  204 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| |||||||||||| ||||||||| || |||||||| ||||||||||||||| ||||||| || |||||||||||    
T  4406440 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaatggcacgaatagttatttttctc 4406356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 9311064 - 9311148
Alignment:
Q  204 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| | ||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||| | |||||  |||||||    
T  9311064 gtaagtcataaggacttagtgagaagacaacaaccactaccaactagaagggaaacacacaagggcacaattattttcttttctc 9311148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 10416212 - 10416155
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacga 272  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| ||||||||    
T  10416212 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacatgggcacga 10416155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 4698170 - 4698113
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacga 272  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| || |||||    
T  4698170 gacttagtgaggagacaacaatcaccaccaactataagggaaacacacatggacacga 4698113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 35110833 - 35110800
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagat 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  35110833 ataaaacatcctagactaccaaatagttgcagat 35110800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 45333113 - 45333072
Alignment:
Q  25 acatcctagacttccaaatagttgcagatacatcaattgaca 66  Q
    |||||||||||| |||||||| ||||||||||||||| ||||    
T  45333113 acatcctagactaccaaatagctgcagatacatcaatggaca 45333072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 61002 - 60742
Alignment:
Q  23 aaacatcctagacttccaaatagttgcagatacatcaattgacattaaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgt 122  Q
    ||||||| |||||| |||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  61002 aaacatcatagactcccaaatagctgcagatacatcaattgacactaaaatatacataaataaaagagtcggccatcaaggaagcctaccaacaaaatgt 60903  T
Q  123 cacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttag 222  Q
     || | |||||||||||||||| ||||| ||||||||| || |||||||||||||||         ||||||| |||||||||||||  |||||||||||    
T  60902 gacgccgctgagcttcgagtctgctagccgctttctactcagctgcttgaaaatctg----aaaaaatagaaagagaaagagtaagtcgcaaggacttag 60807  T
Q  223 tgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||| |||||||    
T  60806 tgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattaattacttttctc 60742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 233320 - 233479
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagatacatcaattgacattaaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaa 119  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  233320 ataaaacatcctagactaccaaatagctgcagatgcatcaattgacactaaaatgtacataagtaaaggagtcggccatcaaggaggcctaccaataaaa 233419  T
Q  120 tgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctg 179  Q
    ||| |||||||||||||||||||||||||||| ||||||||| | || ||||||||||||    
T  233420 tgtgacactgctgagcttcgagtctactagcaactttctacctagcttcttgaaaatctg 233479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 182811 - 182889
Alignment:
Q  193 aaaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcac 270  Q
    |||| |||||| ||||| ||||| |||||| ||| |||||||||  ||||||||||| |||| ||||||||||| ||||    
T  182811 aaaatgaaagactaagtcacaagtacttagggaggagacaacaatcaccaccaactagaaggaaaacacacaagtgcac 182889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 287
Target Start/End: Original strand, 27560947 - 27561135
Alignment:
Q  95 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaa 194  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||         ||||||    
T  27560947 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa---atagaa 27561042  T
Q  195 aaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  27561043 aataaaagagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctc 27561135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 51533930 - 51533841
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactattta 279  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||    
T  51533930 atagacaatgaaagagtaagtcacaaggacttagtgagagacaacaaccaccacc-actagaagggaaacacacaagggcacgattattta 51533841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 18694128 - 18694217
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactattta 279  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||| ||||||    
T  18694128 atagagaatgaaagagtaagtcacaaggacttagtgagagacaacaaccaccacc-actggaagggaaacacacaagggcacgattattta 18694217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 27733593 - 27733675
Alignment:
Q  205 taagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||| |||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||| ||| ||| ||||||    
T  27733593 taagtcacaaggacttagtgagagacaacaaccactacccactagaagggaaacacacaagggcacgattatgtatatttctc 27733675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 54351775 - 54351852
Alignment:
Q  194 aaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacg 271  Q
    |||||||||||||||  || ||||||||||||||||||||||| ||||||||||| || ||||||| ||||| |||||    
T  54351775 aaaagaaagagtaagccactaggacttagtgagagacaacaaccaccaccaactagaaaggaaacatacaagagcacg 54351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 4763405 - 4763489
Alignment:
Q  204 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| |||||||||||| ||||||||| || |||||||| ||||||||||||||| ||||||| || |||||||||||    
T  4763405 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaatggcacgaatagttatttttctc 4763489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 5358535 - 5358623
Alignment:
Q  199 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||| | ||||||||||||| |||||||||| || ||| |||| ||| ||||||||||||| ||||| |||||| |||||||    
T  5358535 aaagagtaagtcataaggacttagtgaaagacaacaaccactacccactagaagagaaacacacaaggacacgattatttagttttctc 5358623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 11512701 - 11512801
Alignment:
Q  189 atagaaaaagaaagagtaagtt-acaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttct 286  Q
    ||||||||  ||||||||| || ||||||||||  |||| |||||||||| | || | |||||||||||||||||||||||| ||| || ||| ||||||    
T  11512701 atagaaaataaaagagtaatttcacaaggacttgatgaggagacaacaaccatcatcgactaaaagggaaacacacaagggcgcgattaattacttttct 11512800  T
Q  287 c 287  Q
    |    
T  11512801 c 11512801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 5358363 - 5358415
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagatacatcaattgacattaaaat 73  Q
    |||||||||| ||| |||| || ||| |||||||||||||||||||||||||||    
T  5358363 ataaaacatcataggcttc-aagtagctgcagatacatcaattgacattaaaat 5358415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 287
Target Start/End: Complemental strand, 19435363 - 19435203
Alignment:
Q  124 acactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaaaaagaaagagtaagttacaaggacttagt 223  Q
    |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||         ||||||||  |||||||||||||||||||||||||    
T  19435363 acacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa---atagaaaataaaagagtaagttacaaggacttagt 19435267  T
Q  224 gagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||||| ||||||||||| ||||||||| || |||| ||||| ||||||||||||||    
T  19435266 gagagacaacaaccaccaccaactagaagggaaacgcaaaaggacacgattatttatttttctc 19435203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 28058369 - 28058453
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  28058369 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgaatatttatttttctc 28058453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 28068794 - 28068878
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  28068794 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgaatatttatttttctc 28068878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 17954693 - 17954781
Alignment:
Q  199 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||| |||||||||||||||||||||||||| || ||| |||| |||||||||||| ||| |||||| ||| ||| ||||||    
T  17954693 aaagagtaagtcacaaggacttagtgagagacaacaaccactacccactagaagggaaacacaaaagagcacgattatgtatatttctc 17954781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 28104096 - 28104012
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  28104096 gtaagtcacaaagacttagtgaggagaaaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttatctc 28104012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 23397923 - 23397984
Alignment:
Q  201 agagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacac 262  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  23397923 agagtaagtcacagggacttagtgagagacaacaaccaccaccaactagaagggaaacacac 23397984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 6911242 - 6911325
Alignment:
Q  205 taagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||| |||| |||||||||||| ||||||||| || |||||||| ||||||||||||||| ||||||| || |||||||||||    
T  6911242 taagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaatggcacgaatagttatttttctc 6911325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 9436001 - 9436076
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagt-gagagacaacaactaccaccaactaaaagggaaacacaca 263  Q
    |||||||| |||||||||||| ||||||||||||| | ||||||||||| ||||||||||| |||| |||||||||    
T  9436001 atagaaaatgaaagagtaagtcacaaggacttagtggggagacaacaaccaccaccaactataaggaaaacacaca 9436076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 5705490 - 5705547
Alignment:
Q  216 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacga 272  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||||||||||||    
T  5705490 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacaagggcacga 5705547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 11201052 - 11201006
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagatacatcaattgaca 66  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||    
T  11201052 ataaaacatcttagactaccaaatagttgtagatacatcaattgaca 11201006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 287
Target Start/End: Complemental strand, 4035 - 3847
Alignment:
Q  95 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnntatagaa 194  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||         ||||||    
T  4035 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa---atagaa 3940  T
Q  195 aaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||  ||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| | |||| |||||||    
T  3939 aataaaagagtaagtcacaaggacttagtgagagacaacaaccactaccaactagaagggaaacacacaagggcacgattttttacttttctc 3847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 15599117 - 15599019
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |||||||    
T  15599117 atagaaaattaaagagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacatgggcacgattatttacttttctc 15599019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 5519373 - 5519471
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  |||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  5519373 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaaatagaagggaaacacacaagggcacgattatttatttttctc 5519471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 42785783 - 42785685
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||| || ||| |||||||    
T  42785783 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaactagaagggaaacacacaagagcacgattagttacttttctc 42785685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 27198198 - 27198263
Alignment:
Q  206 aagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcac 270  Q
    |||| |||| ||||||||||| |||||||||| ||||||||||| || | ||||||||||| ||||    
T  27198198 aagtcacaaagacttagtgaggagacaacaaccaccaccaactagaacgtaaacacacaagagcac 27198263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 18982714 - 18982616
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  18982714 atagaaaataaaagagtaagtcacgaggacttagtgagagacaacaaccactaccaactagaagggaaacacccaagggcacgattatttatttttctc 18982616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 26917241 - 26917338
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | |||| |||||||    
T  26917241 atagaaaatgaaggagtaagttacaaggacttagtgagagacaacaaccaccacc-actagaagggaaacacacaagggcacgattctttacttttctc 26917338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 4706552 - 4706650
Alignment:
Q  189 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||| || ||| |||||||    
T  4706552 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaactagaagggaaacacacaagagcacgattagttacttttctc 4706650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 26340387 - 26340452
Alignment:
Q  200 aagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaag 265  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  26340387 aagagtaagtcacaaggacatagtgagagacaacaaccaccaccaactagaagggaaacacacaag 26340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 28603022 - 28603110
Alignment:
Q  199 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    ||||||||||| | | |||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||| || ||| |||||||    
T  28603022 aaagagtaagtcagagggacttagtgagagacaacaatcaccaccaactagaagggaaacacacaagagcacgattagttacttttctc 28603110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 15925219 - 15925135
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| ||||||||||| |||||||||  ||||||||||| ||||||| ||||||| ||||||| |||||| |||||||    
T  15925219 gtaagtcacaaagacttagtgaggagacaacaatcaccaccaactagaagggaagcacacaacggcacgattatttacttttctc 15925135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 18982882 - 18982836
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagatacatcaattgaca 66  Q
    |||| |||||||||||| |||||||| ||||||||||||||| ||||    
T  18982882 ataacacatcctagactaccaaatagctgcagatacatcaatggaca 18982836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 36264128 - 36264212
Alignment:
Q  199 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttt 283  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||| ||||||||||    
T  36264128 aaagagtaagtcacagggacttagtgagagacaacaaccaccaccaacaagaagggaaacacacaagagcacgattatttatttt 36264212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 28803838 - 28803754
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| ||||||||||| |||||||||  ||||||||||| |||||||| |||||||||||||| |||||| |||||||    
T  28803838 gtaagtcacaaagacttagtgaggagacaacaatcaccaccaactagaagggaaatacacaagggcacgattatttacttttctc 28803754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 44060056 - 44060131
Alignment:
Q  204 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactattt 278  Q
    |||||| |||| |||||||||||| ||||||||| || |||||||| || |||||||||||||||||||| |||||    
T  44060056 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaaaggaaacacacaagggcacgattattt 44060131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 15818515 - 15818455
Alignment:
Q  20 ataaaacatcctagacttccaaatagttgcagatacatcaattgacattaaaatgtacata 80  Q
    ||||| ||||||||||| |||||||| | ||| ||||||||||||||||||| ||||||||    
T  15818515 ataaatcatcctagactaccaaatagctacaggtacatcaattgacattaaagtgtacata 15818455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 29466909 - 29466983
Alignment:
Q  198 gaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaa-aagggaaacacacaagggcac 270  Q
    ||||| |||||| |||| || |||| ||| |||||||||| |||||||||| | |||||||||||||||||||||    
T  29466909 gaaagggtaagtcacaatgatttagcgaggagacaacaaccaccaccaacttagaagggaaacacacaagggcac 29466983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 406869 - 406944
Alignment:
Q  188 tatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacaca 263  Q
    |||||||||  ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  406869 tatagaaaataaaagattaagtcacaaggacttagtgagagacaacaaccaccaccaactaaaagggaaacacaca 406944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 412872 - 412955
Alignment:
Q  188 tatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacg 271  Q
    |||||||||  ||||| ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  412872 tatagaaaataaaagattaagtcacaaggtcttaatgagagacaacaactaccactaactaaaagggaaacacacaagggcacg 412955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 424255 - 424326
Alignment:
Q  199 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcac 270  Q
    ||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  424255 aaagattaagtcacaaggacatagtgagagacaacaaccaccatcaactaaaagggaaacgcacaagggcac 424326  T

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Target: scaffold0713 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 995 - 911
Alignment:
Q  204 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||| |||| ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  995 gtaagtcacaaagacttagtgaggagacatcaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctc 911  T

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Target: scaffold0438 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 7563 - 7650
Alignment:
Q  200 aagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 287  Q
    |||||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||  |||||||    
T  7563 aagagtaagtcacaaggacatagggagagacaacaaccaccaccaactagaagggaaacacacaagggtacgattattttcttttctc 7650  T

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Target: scaffold0438; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 10548 - 10613
Alignment:
Q  200 aagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaag 265  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  10548 aagagtaagtcacaaggacatagtgagagacaacaaccaccaccaactagaagggaaacacacaag 10613  T

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