View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2573_low_10 (Length: 238)
Name: NF2573_low_10
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2573_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 8019507 - 8019288
Alignment:
| Q |
18 |
gtattagagcttttgcatcccccaaaattcaatcaccgccctgaacttaaacaatcatgcactgcctttataacaaaacaaaatttacatcaatcaattt |
117 |
Q |
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| T |
8019507 |
gtattagggcttttgcaacccccaaaattcaatcaccactctgaacctaaacaatcatgcactgcctttataaccaaacaaaatttacatcaatcaactt |
8019408 |
T |
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| Q |
118 |
ttctagttaatagataaaatagttgtaatgcttttatgtaaatttttaagtataataccagaaattaaaataacagtcgtgttaatgcttttacatctcc |
217 |
Q |
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| T |
8019407 |
ttcaagttaatagataaaatagttgtaatgcttttatgtaaatttttaagtataataccaaaaattaaaatagcagttgtgttaatgcttttacatctcc |
8019308 |
T |
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| Q |
218 |
caaaattcaatcaccaaaat |
237 |
Q |
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|||||||||||||||||||| |
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| T |
8019307 |
caaaattcaatcaccaaaat |
8019288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 42175741 - 42175811
Alignment:
| Q |
168 |
tataataccagaaattaaaa-taacagtcgtgttaatgcttttacatctcccaaaattcaatcaccaaaat |
237 |
Q |
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| T |
42175741 |
tataataccagagattaaaaatagcaggcgttttaaagcttttgcatcttccaaaattcaatcaccaaaat |
42175811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 8019534 - 8019470
Alignment:
| Q |
169 |
ataataccagaaattaaaataacagtcgtgttaatgcttttacatctcccaaaattcaatcacca |
233 |
Q |
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| T |
8019534 |
ataatgccagaagttaaaataacagttgtattagggcttttgcaacccccaaaattcaatcacca |
8019470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 32638389 - 32638281
Alignment:
| Q |
126 |
aatagataaaatagttgtaatgcttttatgtaaatttttaagtataataccagaaattaaaataacagtcgtgttaatgcttttacatctcccaaaattc |
225 |
Q |
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|||||||| |||||||||||| |||||||||||| |||||| | |||| ||||| ||||| || ||| |||||| |||||| |||| |||| ||||| |
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| T |
32638389 |
aatagatagaatagttgtaatccttttatgtaaa-ttttaactttaatgacagaagttaaagtagtagttgtgttagagcttttgcatcccccataattc |
32638291 |
T |
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| Q |
226 |
aatcaccaaa |
235 |
Q |
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| T |
32638290 |
attcaccaaa |
32638281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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