View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2573_low_11 (Length: 235)
Name: NF2573_low_11
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2573_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 33647098 - 33647283
Alignment:
| Q |
10 |
gagaagaagataaactaagagtgataaaacaaaagtcatgtgcaacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaa |
109 |
Q |
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| T |
33647098 |
gagaagaagataaactaagagtgataaaacaaaagtcatgtgcaacggttcgaatagaaaaccttgtcaaactggtttgataagggaaaatgaatgtgaa |
33647197 |
T |
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| Q |
110 |
agacaagaagaacttcatcataagatttcacctttgcttgagttttcagccaaagatgatgtaatggcgttcacagctgctgttga |
195 |
Q |
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| T |
33647198 |
agacaagaagaacatcatcataagatttcagctttgcttgagttttcagccaaagatgatgtaatggcgttcacagatgcagttga |
33647283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 25811947 - 25812106
Alignment:
| Q |
40 |
aaaagtcatgtgcaacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaaagacaagaagaacttcatcataagatttca |
139 |
Q |
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| T |
25811947 |
aaaagtcatgttcaacggtgcgaatagaaaaccttgtcaaactggtttgattaaggaaaatgaatatggaagacaataagaacttcatcataagatttcg |
25812046 |
T |
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| Q |
140 |
cctttgcttgagttttcagccaaagatgatgtaatggcgttcacagctgctgttgaaaaa |
199 |
Q |
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| T |
25812047 |
gctttgcttgagttttcagccaaagatgacgtattggcattcacagatgctgttgaaaaa |
25812106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 25817659 - 25817792
Alignment:
| Q |
31 |
tgataaaacaaaagtcatgtgcaacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaaagacaagaagaacttcatcat |
130 |
Q |
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| T |
25817659 |
tgataaaatcaaagtcatgtgtaacagtgcgaatggaaaaccttgtcaaattagtttgattagggaaaatgaatatggaacacaaga---acttcatcat |
25817755 |
T |
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| Q |
131 |
aagatttcacctttgcttgagttttcagccaaagatg |
167 |
Q |
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| T |
25817756 |
aagatttcagctttgcttgagttttcagccaaagatg |
25817792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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