View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2573_low_2 (Length: 647)
Name: NF2573_low_2
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2573_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 45110484 - 45110277
Alignment:
| Q |
19 |
cacccaaggtcactctcactggaaacatggataacctctacactctggtcagtcactcaattgtatctctt-gatcttgcatgcatatatgcatatcatc |
117 |
Q |
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| T |
45110484 |
cacccaaggtcactctcactggaaacatggataacctctacactctggtcagtcactcaattgtatctctttgatcttgcatgcatatatgcatatcatc |
45110385 |
T |
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| Q |
118 |
aaagttttgatggatttctttaacaattttgtgcatgcaggttatgactgatccagatgcaccaagtcccagtgagccaagcatgcgtgagctgatacac |
217 |
Q |
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| T |
45110384 |
aaagttttgatggatttctttaacaattttgtgcatgcaggttatgactgatccagatgcaccaagccccagtgagccaagcatgcgtgaactgatacac |
45110285 |
T |
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| Q |
218 |
tggtcatc |
225 |
Q |
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|||||||| |
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| T |
45110284 |
tggtcatc |
45110277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 335 - 603
Target Start/End: Complemental strand, 45110165 - 45109895
Alignment:
| Q |
335 |
ggataattatattttcatatgaatttactgatcttcatatttcaattttttaaggattgtggttgacattcctggaggaacaaacccaaagcgaggtata |
434 |
Q |
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| T |
45110165 |
ggataattatattttcatatgaatttactgatcttcatgtttccattttttaaggattgtggttgacattcctggaggaacaaatccaaagcgaggtata |
45110066 |
T |
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| Q |
435 |
tataaaagaaataattttcgatcggcttctcataacta-nnnnnnncttcttgttatgtacatgagtttatataattatat-tannnnnnnncacttatc |
532 |
Q |
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| T |
45110065 |
tataaaagaaataattttcgatcggcttctcataactattttttttcttcttgttatgtatatgggtttatataattatatattttttttttcacttatc |
45109966 |
T |
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| Q |
533 |
aagatgttgcatggatgagtttatataannnnnnnnggatgacatacaatattttagtaacattttaagaa |
603 |
Q |
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| T |
45109965 |
aagatgttgcatggatgagtttatataattttttttggatgacatacaatgttttagtaacattttaagaa |
45109895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 335 - 603
Target Start/End: Original strand, 18583233 - 18583502
Alignment:
| Q |
335 |
ggataattatattttcatatgaatttactgatcttcatatttcaattttttaaggattgtggttgacattcctggaggaacaaacccaaagcgaggtata |
434 |
Q |
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| T |
18583233 |
ggataattatattttgatatgaatttaatgatcttcatgtttcctttttttaaggattgtggttgacatccttggaggaacaaacccaaagcgaggtata |
18583332 |
T |
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| Q |
435 |
tataaaagaaataattttcgatcggcttctcataactannnnnnncttctt---gttatgtacatgagtttatataattatattannnnnnnncacttat |
531 |
Q |
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| T |
18583333 |
tataaaagaaatagttttcgatcggcttctcataacta-ttttttcttcttataattatgtacatgggtttatataattatatta-tttttttcacttat |
18583430 |
T |
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| Q |
532 |
caagatgttgcatggatgagtttatataannnnnnnnggatgacatacaatattttagtaacattttaagaa |
603 |
Q |
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| T |
18583431 |
caagatgttgcatggatgagttgatataaaaaaatttggatgacatacaatgtgttagtaacattttaagaa |
18583502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 18583053 - 18583134
Alignment:
| Q |
144 |
ttttgtgcatgcaggttatgactgatccagatgcaccaagtcccagtgagccaagcatgcgtgagctgatacactggtcatc |
225 |
Q |
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| T |
18583053 |
ttttgtgcatgtaggttatgactgatcaagatgcactaagccccagtgagtcaagcatgcgtgagttgatacactggtcatc |
18583134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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