View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2573_low_3 (Length: 606)
Name: NF2573_low_3
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2573_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Original strand, 28417908 - 28418482
Alignment:
| Q |
14 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
113 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28417908 |
agcatgggactacgagaagccgatgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagag |
28418007 |
T |
|
| Q |
114 |
cttggtgttactctcatcccacctgttcaacacatgcaaactaat--gagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttata |
211 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28418008 |
cttggtgttactcttatcccacctgttcaacacatgcaaactaatatgagagaaatggctgatccttctaccatttcctccactgtcaaaagcttttat- |
28418106 |
T |
|
| Q |
212 |
tatgattcaaatattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaacgactgtgaaaaacaaaagaatatcattgtcttttaga |
311 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418107 |
---gattcaaagattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaacgactgtgaaaaacaaaagaatatcattgtcttttaga |
28418203 |
T |
|
| Q |
312 |
gtgttgctttggatagtagcatgttcttgatctcttgtacacatttacnnnnnnnatatgaaactgtaaataagagtgtgttgatttgtatcatgctctt |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418204 |
gtgttgctttggatagtagcatgttcttgatctcttgtacacattgactttttttatatgaaactgtaaataagagtgtgttgatttgtatcatgctctt |
28418303 |
T |
|
| Q |
412 |
gacttcttttacaagttatctcttttgttttgcttagaannnnnnnatttatgaccaaggtaaaacatattgatccaaatataaacaacttcagtttaat |
511 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418304 |
gacttcttttacaagttatctcttttgttttgcttagaatttttttatttatgaccaaggtaaaacatattgatccaaatataaacaacttcagtttaat |
28418403 |
T |
|
| Q |
512 |
tttagaaatatcattaaaacctcttgacttctcttacaagttatcctctccatgcttagcctttggagtttctactatt |
590 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28418404 |
tttagaaatatcattaaaacctcttgacttcttttacaagttatcctctccatgcttagcctttggagtttgtactatt |
28418482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 522
Target Start/End: Complemental strand, 28585326 - 28584797
Alignment:
| Q |
14 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
113 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28585326 |
agcatgggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagag |
28585227 |
T |
|
| Q |
114 |
cttggtgttactctcatcccacctgttcaacacatgcaaacta--atgagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttata |
211 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
28585226 |
cttggtgttactcttatcccacctgttcaacacatgcaaactaatatgagagaaatggctgatccttctaccatttcttcgaccgtcaaaagcttt---- |
28585131 |
T |
|
| Q |
212 |
tatgattcaaatattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaac-gactgtgaaaaacaaaagaatatcattgtcttttag |
310 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |
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| T |
28585130 |
tatgattcaaagattttgaaagataaataaattgttggtgaggtttaggaagaatgttttaacggactgtgaaaaacaagagaatatcattgtcttctag |
28585031 |
T |
|
| Q |
311 |
agtgttgctttggatagtagcatgttc-ttgatctcttgtacacatt----------------tacnnnnnnnatatgaaactgtaaataagagtgtgtt |
393 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||| ||||| || |||| |||| |
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| T |
28585030 |
agtgttgctttggatagtagcatgctctttgatctcttgtacacattggaatatgttcatgtatacttttttgatatgaaaatgtaagtatgagtttgtt |
28584931 |
T |
|
| Q |
394 |
gatttgtatcatgctcttgacttcttttacaagttatctcttttgttttgcttagaa------nnnnnnnatttatgaccaaggtaaaacatattgatcc |
487 |
Q |
| |
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| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||| |
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| T |
28584930 |
gctttgtagcatgctcttaacttcttttacaagttatctcttttgttttgcttagaattttctttatattttttatgaccgaggtaaaacat-ttggtcc |
28584832 |
T |
|
| Q |
488 |
aaatataaacaacttcagtttaattttagaaatat |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
28584831 |
aaatataaacaacttcagtttaattttagaaatat |
28584797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 28404473 - 28404814
Alignment:
| Q |
14 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
113 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
28404473 |
agcatgggactacgagaagccgatgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagag |
28404572 |
T |
|
| Q |
114 |
cttggtgttactctcatcccacctgttcaacacatgcaaactaat--gagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttata |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| || || ||||||||||||||| |
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| T |
28404573 |
cttggtgttactctcatcccacctgttcaacacatgccaacaaatatgagagaaatggctgatccttctaccattttttcgaccgtcaaaagcttttat- |
28404671 |
T |
|
| Q |
212 |
tatgattcaaatattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaacgactgtgaaaaacaaaagaatatcattgtcttttaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||| ||||||||||||||||||||||| |||| |
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| T |
28404672 |
---gattcaaatattctgaaagataaataaattgttggtgaggtttaggaaa---gttataaccattgtacaaaacaaaagaatatcattgtctcctaga |
28404765 |
T |
|
| Q |
312 |
gtgttgctttggatagta----gcatgttcttgatctcttgtacacatt |
356 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||| |||||||||| |
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| T |
28404766 |
gtgttgctttggacagtagcatgcatgctcttgatctcatgtacacatt |
28404814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 28580326 - 28580128
Alignment:
| Q |
14 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||| ||| | ||||||||||| |||||||||||||| | | ||||| |||||| || |
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|
| T |
28580326 |
agcatgggactacgagaagccgatgtttgttgcaccgtcaatgaatgatgccatgtggagaaatcctttcacagaacaacaattgatgaggattgaaaag |
28580227 |
T |
|
| Q |
114 |
cttggtgttactctcatcccacctgttcaacacatgcaaacta--atgagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttat |
210 |
Q |
| |
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|||||||||||| | |||| ||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
28580226 |
cttggtgttactgttatccaacctgttgaacacatgccaactaatatgagagaaatggcagatccttctaccatttcctccaatgtcaaaagcttttat |
28580128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 28404870 - 28404922
Alignment:
| Q |
396 |
tttgtatcatgctcttgacttcttttacaagttatctcttttgttttgcttag |
448 |
Q |
| |
|
|||||| ||| |||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
28404870 |
tttgtagcatactcttgaccccttttacaagttatctcttttggtttgcttag |
28404922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 27834806 - 27834771
Alignment:
| Q |
20 |
ggactacgagaagccgatgtttgttgcaccatcaat |
55 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27834806 |
ggactacgagaagccggtgtttgttgcaccatcaat |
27834771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 534
Target Start/End: Original strand, 28404970 - 28405014
Alignment:
| Q |
490 |
atataaacaacttcagtttaattttagaaatatcattaaaacctc |
534 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||||| ||||||| |
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|
| T |
28404970 |
atataaataactttagtttaattttataaatatcattgaaacctc |
28405014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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