View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2573_low_5 (Length: 308)
Name: NF2573_low_5
Description: NF2573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2573_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 48884368 - 48884646
Alignment:
| Q |
15 |
gataactattacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatctggaaatggttctgatttgatagtatttgattatctca |
114 |
Q |
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| T |
48884368 |
gataactattacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatctggaaatggttctgatttgatagtatttgattatctca |
48884467 |
T |
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| Q |
115 |
caataaaagtagcaagaggttacttctcaaaagaaaataaggctggagagggtggatttggtgcagtgtacaaggtaacatttgatagtatttgattacc |
214 |
Q |
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| T |
48884468 |
caataaaagtagcaagaggttacttctcaaaagaaaataaggccggagagggtggatttggtgcagtgtacaaggtaacatttgatagtatttgattacc |
48884567 |
T |
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| Q |
215 |
ttgttaaataaattgttgagatattttaatctcgatagccccaaaactctattagctacatgatattttaatctcgatg |
293 |
Q |
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| T |
48884568 |
ttgttaaataaattgttgagatattttaatctcgatagccccaaaactctattagctacatgatattttaatctcgatg |
48884646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 48477804 - 48477608
Alignment:
| Q |
6 |
aggagcagagataactattacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatct----ggaaatggttctgatttgatagta |
101 |
Q |
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| T |
48477804 |
aggaacagtgataactattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagta |
48477705 |
T |
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| Q |
102 |
tttgattatctcacaataaaagtagcaagaggttacttctcaaaagaaaataaggctggagagggtggatttggtgcagtgtacaaggtaacatttg |
198 |
Q |
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| T |
48477704 |
tttgattatctcacaataaaacttgcaacaagttacttctcaacagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttg |
48477608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 48469480 - 48469284
Alignment:
| Q |
6 |
aggagcagagataactattacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatct----ggaaatggttctgatttgatagta |
101 |
Q |
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| T |
48469480 |
aggaacagtgattactattacaagaatgatgtacagattgaggatacatttatcagcacctgacgaaggtctcaatgaaaatggttctgatttgatagta |
48469381 |
T |
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| Q |
102 |
tttgattatctcacaataaaagtagcaagaggttacttctcaaaagaaaataaggctggagagggtggatttggtgcagtgtacaaggtaacatttg |
198 |
Q |
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| T |
48469380 |
tttgattatctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtatcatttg |
48469284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 48485533 - 48485357
Alignment:
| Q |
23 |
ttacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatct----ggaaatggttctgatttgatagtatttgattatctcacaat |
118 |
Q |
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| T |
48485533 |
ttacaagaatgatatacaaaatgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaat |
48485434 |
T |
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| Q |
119 |
aaaagtagcaagaggttacttctcaaaagaaaataaggctggagagggtggatttggtgcagtgtacaaggtaacat |
195 |
Q |
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| T |
48485433 |
taaagtggcaacagataacttctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacat |
48485357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 48469117 - 48469068
Alignment:
| Q |
221 |
aataaattgttgagatatttt-aatctcgatagccccaaaactctattag |
269 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
48469117 |
aataaattgttttgatatttttaatctcgatagccccaaaactctattag |
48469068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 48477444 - 48477412
Alignment:
| Q |
218 |
ttaaataaattgttgagatattttaatctcgat |
250 |
Q |
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| T |
48477444 |
ttaaataacttgttgagatattttaatctcgat |
48477412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 38817802 - 38817998
Alignment:
| Q |
6 |
aggagcagagataactattacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatct----ggaaatggttctgatttgatagta |
101 |
Q |
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| T |
38817802 |
aggaacagtgattactattacaagaatgatgtacagattggggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagta |
38817901 |
T |
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| Q |
102 |
tttgattatctcacaataaaagtagcaagaggttacttctcaaaagaaaataaggctggagagggtggatttggtgcagtgtacaaggtaacatttg |
198 |
Q |
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| T |
38817902 |
tttgattatctcacaataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttg |
38817998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 38818167 - 38818229
Alignment:
| Q |
218 |
ttaaataaattgttgagatattttaatctcg--atagccccaaaactctattagctacatgat |
278 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
38818167 |
ttaaataaattgctgagatattttaatctcgttttagccccaaaactctattaattacatgat |
38818229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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