View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2574_high_7 (Length: 295)
Name: NF2574_high_7
Description: NF2574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2574_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 17107923 - 17108197
Alignment:
| Q |
3 |
ctgtgtttggggatttttgcttaacattgggagccgaaagagggaaaaatatatcagggataactcgtcatttttcatttttatgtgataaaattggatc |
102 |
Q |
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| T |
17107923 |
ctgtgtttggggatttttgcttaacattgggagccgaaagagggaaaaatatatcagggataactcgtcatttttcatttgtatgtgataaaattggatc |
17108022 |
T |
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| Q |
103 |
ttcaaaagggttcgagaccttatatacagataataagttgtggacatttataccactgtctatgaattcttaccaacatcgttggttgtcgcccttgacg |
202 |
Q |
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| T |
17108023 |
ttcaaaagggttcgagaccttatatacagataataagttgtggacatttataccactgtctatgaattcttaccaacatcgttggttgtcgcccttgacg |
17108122 |
T |
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| Q |
203 |
tcattggagcttccaaagttgttcttgaagtgtaagttgttgcgtgtattgtcattgtgcggatacatggatatg |
277 |
Q |
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| T |
17108123 |
tcattggagcttccaaagttgttcttgaaatgtaagttgttgcgtgtattgtcattgtgcggatacatggatatg |
17108197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 17028519 - 17028560
Alignment:
| Q |
62 |
ataactcgtcatttttcatttttatgtgataaaattggatct |
103 |
Q |
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| T |
17028519 |
ataactcgtcatttttcatttttatgtgatgaaataggatct |
17028560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 17046857 - 17046898
Alignment:
| Q |
62 |
ataactcgtcatttttcatttttatgtgataaaattggatct |
103 |
Q |
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| T |
17046857 |
ataactcgtcatttttcatttttatgtgatgaaataggatct |
17046898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 17094350 - 17094391
Alignment:
| Q |
62 |
ataactcgtcatttttcatttttatgtgataaaattggatct |
103 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||| |
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| T |
17094350 |
ataactcgtcatttttcatttttatgtgatgaaataggatct |
17094391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 91
Target Start/End: Original strand, 16976647 - 16976676
Alignment:
| Q |
62 |
ataactcgtcatttttcatttttatgtgat |
91 |
Q |
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| T |
16976647 |
ataactcgtcatttttcatttttatgtgat |
16976676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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