View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2574_low_1 (Length: 625)

Name: NF2574_low_1
Description: NF2574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2574_low_1
NF2574_low_1
[»] chr5 (3 HSPs)
chr5 (160-615)||(454222-454677)
chr5 (19-152)||(454063-454196)
chr5 (479-605)||(470066-470192)
[»] chr1 (5 HSPs)
chr1 (417-554)||(47698389-47698526)
chr1 (481-559)||(47574620-47574698)
chr1 (481-557)||(47584322-47584398)
chr1 (481-568)||(47607319-47607406)
chr1 (477-554)||(47636542-47636619)
[»] scaffold0007 (1 HSPs)
scaffold0007 (481-599)||(7122-7240)
[»] chr8 (3 HSPs)
chr8 (160-243)||(20101045-20101128)
chr8 (486-568)||(10401677-10401759)
chr8 (164-221)||(19783051-19783108)
[»] chr6 (9 HSPs)
chr6 (486-568)||(20233232-20233314)
chr6 (486-568)||(22127216-22127298)
chr6 (529-599)||(20236134-20236204)
chr6 (529-599)||(22130118-22130188)
chr6 (480-605)||(21968258-21968383)
chr6 (481-568)||(18991041-18991128)
chr6 (481-568)||(22206832-22206919)
chr6 (529-599)||(18995812-18995882)
chr6 (480-568)||(22086142-22086230)
[»] chr3 (3 HSPs)
chr3 (475-559)||(1077344-1077428)
chr3 (475-559)||(1050441-1050525)
chr3 (475-559)||(1091184-1091268)
[»] chr7 (6 HSPs)
chr7 (481-526)||(20231542-20231587)
chr7 (481-511)||(20264016-20264046)
chr7 (481-511)||(20279525-20279555)
chr7 (482-511)||(20284955-20284984)
chr7 (481-509)||(19939123-19939151)
chr7 (481-509)||(19970262-19970290)
[»] chr4 (3 HSPs)
chr4 (160-243)||(28781293-28781376)
chr4 (481-511)||(40823855-40823885)
chr4 (478-554)||(36290572-36290648)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 160 - 615
Target Start/End: Original strand, 454222 - 454677
Alignment:
Q  160 tatttgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggtgtcgctgagccaaatataggctaaacgtgcgtccagct 259  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| | ||||||  || |||||||||| |||||||| |||    
T  454222 tatttgtagcttcactagaaacatggatttctaccgtggttttggctagatgtgaaaaaggtgccactgagctgaacataggctaaatgtgcgtccggct 454321  T
Q  260 agtggtaagccacaaatgttccaaaaactctattagtcttatatgaaattgtaggatccactaaatgaaagttaaaaattcaaattagattctaccatgt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  454322 agtggtaagccacaaatgttccaaaaactctattagtcttatatgagtttgttagatccactaaatgaaagttaaaaattcaaattagattctaccatgt 454421  T
Q  360 gctttcaattagatagtaacaagaaaaactaaagaatatagcattcaagtttgcaaatacttactaagttccagcaattctcttagtatttccttgatgt 459  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454422 gctttcaattagatagtaacaagaaaaactaaggaatatagcattcaagtttgcaaatacttactaagttccagcaattctcttagtatttccttgatgt 454521  T
Q  460 tcatctatatcaatcatttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454522 tcatctatatcaatcatttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 454621  T
Q  560 ctttaagtcttgattgatcatgtaagtaatgaatccctcgtgcaataccacctatg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454622 ctttaagtcttgattgatcatgtaagtaatgaatccctcgtgcaataccacctatg 454677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 454063 - 454196
Alignment:
Q  19 ttcttagcatatgttttaaaactcttattttcacggcaaaaagtcacaacaacttaaaaactactttacatagcttcaactaaatatgtgtttggtttag 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  454063 ttcttagcatatgttttaaaactcttattttcacggcgaaaagtcacaacaacttaaaaactactttacatagctttaattaaatatgtgtttggtttag 454162  T
Q  119 cttttttcagttgctgcctcacattttgatgcct 152  Q
    ||||||||||| ||||||||||||||||||||||    
T  454163 cttttttcagtcgctgcctcacattttgatgcct 454196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 479 - 605
Target Start/End: Original strand, 470066 - 470192
Alignment:
Q  479 ttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatc 578  Q
    |||||| |||||| |||||||||||||||||||| || | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |  ||    
T  470066 ttgccaaaccaaaatctgatatttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtatgactttaagtcttgaatactc 470165  T
Q  579 atgtaagtaatgaatccctcgtgcaat 605  Q
    |||||||||| |||| |||||||||||    
T  470166 atgtaagtaaagaattcctcgtgcaat 470192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 417 - 554
Target Start/End: Complemental strand, 47698526 - 47698389
Alignment:
Q  417 tacttactaagttccagcaattctcttagtatttccttgatgttcatctatatcaatcatttttgccataccaaagtctgatatttttggattcatattc 516  Q
    ||||||||| |||||| ||||||| || ||| ||||| ||| || ||||| | | | |||| ||||||| || || || |||||||| |||||||| ||     
T  47698526 tacttactatgttccaacaattctatttgtacttcctcgatcttgatctagagccaccattcttgccatgccgaaatcagatattttaggattcatgtta 47698427  T
Q  517 ttatctaacaatatattgctaggtttgagatcacgatg 554  Q
    | ||||||||||| ||| ||||||||||||||||||||    
T  47698426 tcatctaacaatacattactaggtttgagatcacgatg 47698389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 481 - 559
Target Start/End: Complemental strand, 47574698 - 47574620
Alignment:
Q  481 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 559  Q
    ||||| ||||| |||||||||||||||||||||||   ||||||||  | || ||||||||| ||||||||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatga 47574620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 47584398 - 47584322
Alignment:
Q  481 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtat 557  Q
    ||||| ||||| |||||||||||||| ||||| ||  ||||||| || | |||||||||||| ||||||||||||||    
T  47584398 gccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtat 47584322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 568
Target Start/End: Complemental strand, 47607406 - 47607319
Alignment:
Q  481 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 568  Q
    ||||| ||||| ||||| ||||| ||||||||||  | |||||| || ||||| |||||||| |||||||||||||| ||||| ||||    
T  47607406 gccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataacttttagtc 47607319  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 554
Target Start/End: Complemental strand, 47636619 - 47636542
Alignment:
Q  477 ttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 554  Q
    ||||||||| |||||||| || ||||||||||||||||    ||| |||||||| ||||||| ||| |||||||||||    
T  47636619 ttttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 47636542  T

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Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 481 - 599
Target Start/End: Complemental strand, 7240 - 7122
Alignment:
Q  481 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcat 580  Q
    |||| |||||| ||||| ||||| ||| ||||||| |  ||||| |  |||||||||||||||||||| |||||||| ||||| |||| ||| |||||||    
T  7240 gccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgtgaatgatcat 7141  T
Q  581 gtaagtaatgaatccctcg 599  Q
    | || ||| ||||||||||    
T  7140 gcaaataaagaatccctcg 7122  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 20101045 - 20101128
Alignment:
Q  160 tatttgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggtgtcgctgagccaaatataggct 243  Q
    |||||||||||||||||||||| || |||| |   ||||||||||  |||||||||||||||  |||||||||||| |||||||    
T  20101045 tatttgtagcttcactagaaacgtgaatttatgccgtggttttgggcagatgtgaaaaaggtaccgctgagccaaacataggct 20101128  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 568
Target Start/End: Original strand, 10401677 - 10401759
Alignment:
Q  486 accaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 568  Q
    |||||| ||||||||||||||| ||||||| | |||||| || ||||| ||||||||||| ||||| || || ||||| ||||    
T  10401677 accaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacggtgaataactttgagtc 10401759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 19783051 - 19783108
Alignment:
Q  164 tgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggt 221  Q
    |||||||||||||||||| || |||| ||  ||||||||||  |||||||||||||||    
T  19783051 tgtagcttcactagaaacgtgaatttgtacggtggttttgggcagatgtgaaaaaggt 19783108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 20233314 - 20233232
Alignment:
Q  486 accaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 568  Q
    |||||| ||||||||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  20233314 accaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 20233232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 486 - 568
Target Start/End: Complemental strand, 22127298 - 22127216
Alignment:
Q  486 accaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 568  Q
    |||||| ||||||||||||||| |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  22127298 accaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 22127216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 599
Target Start/End: Original strand, 20236134 - 20236204
Alignment:
Q  529 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 599  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  20236134 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 20236204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 599
Target Start/End: Original strand, 22130118 - 22130188
Alignment:
Q  529 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 599  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  22130118 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 22130188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 605
Target Start/End: Original strand, 21968258 - 21968383
Alignment:
Q  480 tgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatca 579  Q
    ||||| |||||| ||||| ||||| ||| ||||||| | |||||| |  ||||| |||||||||||||| |||||||| ||||| ||||  || || |||    
T  21968258 tgccaaaccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctca 21968357  T
Q  580 tgtaagtaatgaatccctcgtgcaat 605  Q
    || || ||| |||| ||||| |||||    
T  21968358 tgcaaataaagaattcctcgagcaat 21968383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 568
Target Start/End: Original strand, 18991041 - 18991128
Alignment:
Q  481 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 568  Q
    |||| |||||| ||||| ||||| ||| ||||||| |  ||||| |  |||||||||||||||||||| |||||||| ||||| ||||    
T  18991041 gccaaaccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtc 18991128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 568
Target Start/End: Complemental strand, 22206919 - 22206832
Alignment:
Q  481 gccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 568  Q
    |||| |||||| || || ||||| ||| ||||||| | |||||| |  |||||||||||||||||||| |||||||| ||||| ||||    
T  22206919 gccaaaccaaaatcagaaattttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataactttgagtc 22206832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 599
Target Start/End: Original strand, 18995812 - 18995882
Alignment:
Q  529 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 599  Q
    |||||||||||||||||||| |||||||| ||||| ||||  || || ||||| || ||| ||||||||||    
T  18995812 atattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaataaagaatccctcg 18995882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 568
Target Start/End: Original strand, 22086142 - 22086230
Alignment:
Q  480 tgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 568  Q
    ||||| |||||| ||||| ||| | ||| ||||||| | |||||| |  ||||| || |||||||||||||||||||| ||||| ||||    
T  22086142 tgccaaaccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtc 22086230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 559
Target Start/End: Complemental strand, 1077428 - 1077344
Alignment:
Q  475 atttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 559  Q
    ||||||||||  ||||| ||||||||||||||||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1077428 atttttgccaagccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1077344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 559
Target Start/End: Complemental strand, 1050525 - 1050441
Alignment:
Q  475 atttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 559  Q
    ||||||||||  ||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1050525 atttttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1050441  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 559
Target Start/End: Complemental strand, 1091268 - 1091184
Alignment:
Q  475 atttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 559  Q
    ||||||||||  ||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1091268 atttttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1091184  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 526
Target Start/End: Complemental strand, 20231587 - 20231542
Alignment:
Q  481 gccataccaaagtctgatatttttggattcatattcttatctaaca 526  Q
    |||||||||||||||||||||||||||||||  |||| ||||||||    
T  20231587 gccataccaaagtctgatatttttggattcaacttctcatctaaca 20231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 511
Target Start/End: Complemental strand, 20264046 - 20264016
Alignment:
Q  481 gccataccaaagtctgatatttttggattca 511  Q
    |||||||||||||||||||||||||||||||    
T  20264046 gccataccaaagtctgatatttttggattca 20264016  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 511
Target Start/End: Complemental strand, 20279555 - 20279525
Alignment:
Q  481 gccataccaaagtctgatatttttggattca 511  Q
    |||||||||||||||||||||||||||||||    
T  20279555 gccataccaaagtctgatatttttggattca 20279525  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Complemental strand, 20284984 - 20284955
Alignment:
Q  482 ccataccaaagtctgatatttttggattca 511  Q
    ||||||||||||||||||||||||||||||    
T  20284984 ccataccaaagtctgatatttttggattca 20284955  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 19939151 - 19939123
Alignment:
Q  481 gccataccaaagtctgatatttttggatt 509  Q
    |||||||||||||||||||||||||||||    
T  19939151 gccataccaaagtctgatatttttggatt 19939123  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 19970290 - 19970262
Alignment:
Q  481 gccataccaaagtctgatatttttggatt 509  Q
    |||||||||||||||||||||||||||||    
T  19970290 gccataccaaagtctgatatttttggatt 19970262  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 28781376 - 28781293
Alignment:
Q  160 tatttgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggtgtcgctgagccaaatataggct 243  Q
    ||||| |||||||||||||||| || |||| |   ||||||||||  |||||||||||||||   ||||||||||| |||||||    
T  28781376 tatttttagcttcactagaaacgtgaatttgtgccgtggttttgggcagatgtgaaaaaggtacggctgagccaaacataggct 28781293  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 511
Target Start/End: Original strand, 40823855 - 40823885
Alignment:
Q  481 gccataccaaagtctgatatttttggattca 511  Q
    |||||||||||||||||||||||||||||||    
T  40823855 gccataccaaagtctgatatttttggattca 40823885  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 554
Target Start/End: Complemental strand, 36290648 - 36290572
Alignment:
Q  478 tttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatg 554  Q
    |||||||  ||||||||||| ||||||||||||||||| | ||| ||||| || ||||| | ||| ||||| |||||    
T  36290648 tttgccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatg 36290572  T

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