View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2574_low_11 (Length: 290)
Name: NF2574_low_11
Description: NF2574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2574_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 46846186 - 46846462
Alignment:
| Q |
1 |
taatgtaatctttggtttcctttgttattgtatttatagttttttccatttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46846186 |
taatgtaatctttggtttcctttgttattgtatttatagttttttccatttcttgtgcaaacagagggtgtgatggctggagctaaggcagctgttgttg |
46846285 |
T |
|
| Q |
101 |
ctactattgctactgccattccaactgtaactactccttcaacctattcaattttccttgcttcatgcttctattaattttgacacagttttgattatta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46846286 |
ctactattgctactgccattccaactgtaactactccttcaacctattcaattttccttgcttcatgcttctattaattttgacacagttttgattatta |
46846385 |
T |
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| Q |
201 |
gtttacatttaaaataaccactcttaaatatcctaagaaagagactttttggtatataattaactggaattatatat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46846386 |
gtttacatttaaaataaccactcttaaatatcctaagaaagagactttttggtatataattaactggaattatatat |
46846462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 50392456 - 50392369
Alignment:
| Q |
50 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
140 |
Q |
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| T |
50392456 |
ttcttgtgtaaacagagggtgtgattgctggagctaaggta---gttgttgctactattgccactgccattccagctttaaccactccttc |
50392369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 48304128 - 48304218
Alignment:
| Q |
50 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
140 |
Q |
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| T |
48304128 |
ttcttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgttgctactattgccactgccattccaactgtaaccactccttc |
48304218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 36359607 - 36359517
Alignment:
| Q |
50 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
140 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||| |
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| T |
36359607 |
ttcttgtgtaaacagagggtgtgatggctggagctaaggcagttgttgttgctactattgccactgtcattccaactgtaaccactccttc |
36359517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 34440834 - 34440955
Alignment:
| Q |
50 |
ttcttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttcaacctattc |
149 |
Q |
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||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | ||||| |
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| T |
34440834 |
ttcttatgtaaagagagggtatgatggctggagctaaggcagctgttgttgctactattgccactgccattccaactctaaccactccttccatctattt |
34440933 |
T |
|
| Q |
150 |
aattttccttgcttcatgcttc |
171 |
Q |
| |
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||||||| || |||||| |||| |
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| T |
34440934 |
aattttcttttcttcatacttc |
34440955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 38950402 - 38950490
Alignment:
| Q |
52 |
cttgtgtaaacagagggagtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactccttc |
140 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||| |
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| T |
38950402 |
cttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgttgctactgttgccactgtcattccaactgtaaccactccttc |
38950490 |
T |
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