View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2574_low_12 (Length: 290)
Name: NF2574_low_12
Description: NF2574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2574_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 5451865 - 5451594
Alignment:
| Q |
16 |
aaaaatcatcaaccaatcaagtaaaaagttttc-----ctttgagcatattgagagagttttctgaactgatttccaactcatatgtactcactctatgg |
110 |
Q |
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| T |
5451865 |
aaaattcatcaaccaatcaagtaaaaagttttcttttcctttgagcatattgagagagttttctgagctgatttccaactcatatgtactcactctatgg |
5451766 |
T |
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| Q |
111 |
caaccaaaagtatagtactagtagtagcaattttgcatacgttattgagtgttagcaacactaactagatagtagctacatcaagag--ttcagtaaagc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5451765 |
caaccaaaagtatagtactagtagtagcaattttgcatacgttattgagtgttagcaacactaactagatagtagctacatcaagagaattcagtaaagc |
5451666 |
T |
|
| Q |
209 |
atagcactatttagttgtacttgaatttcttttactttcgttctctttttgtcactctatctattctttcat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5451665 |
atagcactatttagttgtacttgaatttcttttactttcgttctctttttgtcactctatctattctttcat |
5451594 |
T |
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