View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2574_low_3 (Length: 402)
Name: NF2574_low_3
Description: NF2574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2574_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 34953084 - 34953288
Alignment:
| Q |
13 |
aaaatacaacattattgtgcctacaattttaatttcnnnnnnnnnnngttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaat |
112 |
Q |
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| T |
34953084 |
aaaatacaacattattgtgcctacaattttaattt-tttttttttttgttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaat |
34953182 |
T |
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| Q |
113 |
attcaaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcacactagaatgatgaatatgactaaataggagacttgagaaaat |
212 |
Q |
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| T |
34953183 |
attcaaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcatactagaatgatgaatatgactaaataggagagttgagaaaat |
34953282 |
T |
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| Q |
213 |
atcaaa |
218 |
Q |
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|||||| |
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| T |
34953283 |
atcaaa |
34953288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 34971839 - 34971997
Alignment:
| Q |
60 |
gttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctct |
159 |
Q |
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|||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34971839 |
gttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaatattcaaaacgttgaaattgagaggatcttccttcaattttttcctct |
34971938 |
T |
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| Q |
160 |
cagttatgcacactagaatgatgaatatgactaaataggagacttgagaaaatatcaaa |
218 |
Q |
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| T |
34971939 |
cagttatgcacactagaatgatgaatatgactaaataggagagttgagaaaatatcaaa |
34971997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 276 - 387
Target Start/End: Original strand, 34953346 - 34953457
Alignment:
| Q |
276 |
ccatcatatttcaatgggaggaatgaggtgtaaggaggaaggtacctaaccacgagtacaaattaaagcaagtaaatatcaatggttatttatttttatt |
375 |
Q |
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| T |
34953346 |
ccatcatatttcaatgggaggaatgaggtgtaaggaggaaggtacctaaccacgagtacaaattaaagcaagtaaatatcaatggttatttatttttatt |
34953445 |
T |
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| Q |
376 |
gatgaacaatct |
387 |
Q |
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| T |
34953446 |
gatgaacaatct |
34953457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 35032698 - 35032810
Alignment:
| Q |
84 |
aaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcacactagaatgatga |
183 |
Q |
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||||||||||||| |||||||||| ||||||| || || |||||||| || ||||| |||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
35032698 |
aaatctaacctgacaacttcaacagcaatattgaagacattgaaattgagtggatcgtccttcaattgtttcctctcagttatgcaaactagtatgatga |
35032797 |
T |
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| Q |
184 |
atatgactaaata |
196 |
Q |
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| T |
35032798 |
aaatgactaaata |
35032810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 34972063 - 34972101
Alignment:
| Q |
284 |
tttcaatgggaggaatgaggtgtaaggaggaaggtacct |
322 |
Q |
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| T |
34972063 |
tttcaatgggaggaatgaggtgtaaggaggaaggtacct |
34972101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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