View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2574_low_5 (Length: 367)
Name: NF2574_low_5
Description: NF2574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2574_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 29702374 - 29702549
Alignment:
| Q |
176 |
caagctccaacggtcacatttgcctacgtggcaccgcttcgtgaaggacaatcttagtataaaacccctcacattctcattccctcttcaccaatttacc |
275 |
Q |
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| T |
29702374 |
caagctccaacggtcacatttgcctacgtggcaccgcttcgtgaaggacaatctcagtataaaacccctcacactctcattccctcttcaccaatttacc |
29702473 |
T |
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| Q |
276 |
ctattctcgtgtatctgtctgaatcggcgcctcctaaaaccccaaaaccaaaacaccttgttttgcttttcgatct |
351 |
Q |
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| T |
29702474 |
ctattctcgtgtatctgtctgaatcggcgcctcctaaaaccccaaaaccaaaacaccttgttttgcttttcgatct |
29702549 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29702216 - 29702267
Alignment:
| Q |
1 |
taaatatttaaatatttctccgtgtatgcattcattcacgagctttaaatga |
52 |
Q |
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| T |
29702216 |
taaatatttaaatatttctccgtgtatgcattcattcacgagctttaaatga |
29702267 |
T |
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