View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2574_low_8 (Length: 317)

Name: NF2574_low_8
Description: NF2574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2574_low_8
NF2574_low_8
[»] chr8 (8 HSPs)
chr8 (71-300)||(38307037-38307266)
chr8 (133-300)||(38314380-38314547)
chr8 (71-300)||(38301137-38301372)
chr8 (71-300)||(38309779-38310014)
chr8 (148-300)||(38317790-38317942)
chr8 (139-300)||(38321879-38322040)
chr8 (166-300)||(38326591-38326725)
chr8 (71-123)||(38326780-38326832)
[»] chr4 (1 HSPs)
chr4 (166-300)||(38849412-38849546)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 38307266 - 38307037
Alignment:
Q  71 atcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatatacattcaaattacacagattaccatcactaacgaaatt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38307266 atcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatatacattcaaattacacagattaccatcactaacgaaatt 38307167  T
Q  171 gtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcatgagcccatgcaaaattcaaaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38307166 gtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcgtgagcccatgcaaaattcaaaa 38307067  T
Q  271 tcagaagccacagtggtaatgggaacactt 300  Q
    ||||||||||||||||||||||||||||||    
T  38307066 tcagaagccacagtggtaatgggaacactt 38307037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 133 - 300
Target Start/End: Complemental strand, 38314547 - 38314380
Alignment:
Q  133 acattcaaattacacagattaccatcactaacgaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttat 232  Q
    ||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| || ||||| ||||||||||    
T  38314547 acatttaaattagatagattaccatcactaacaaaattgtacagccaactgcgagtgcaaattctagtttccacatccattggtaacatgcgatctttat 38314448  T
Q  233 acttgttaaacacgcatgagcccatgcaaaattcaaaatcagaagccacagtggtaatgggaacactt 300  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  38314447 acttgtttaacacacgtgagcccatgcaaaattcaaaatcagaagccactgtggcaatgggaacactt 38314380  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 38301372 - 38301137
Alignment:
Q  71 atcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatat------acattcaaattacacagattaccatcactaac 164  Q
    |||||||||||||||||| | |||  |||||| |||||||||||||| ||| | ||||||||      ||||||||||| || | |||||||| | ||||    
T  38301372 atcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaattaccattattaac 38301273  T
Q  165 gaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcatgagcccatgcaaaat 264  Q
     ||||||| || |||  |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||     
T  38301272 aaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcgtgagcccatgcaaaac 38301173  T
Q  265 tcaaaatcagaagccacagtggtaatgggaacactt 300  Q
    |||||||| ||||| || ||||||||||||||||||    
T  38301172 tcaaaatcggaagcgacggtggtaatgggaacactt 38301137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 38310014 - 38309779
Alignment:
Q  71 atcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatata------cattcaaattacacagattaccatcactaac 164  Q
    ||||||||||| |||| ||| |||  |||||| |||||| |||||||||||   |||||||||      ||||||||||||| | ||||||||  | |||    
T  38310014 atcataattgaggaggataataattaaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaattacataaattaccattgccaac 38309915  T
Q  165 gaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcatgagcccatgcaaaat 264  Q
     ||||||| || |||| |||||| ||| ||||||||||||||||   | |||||||||||||||||||| ||||||||||| | |||||||||||||||     
T  38309914 aaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgagcccatgcaaaac 38309815  T
Q  265 tcaaaatcagaagccacagtggtaatgggaacactt 300  Q
    ||||||||||| || |||||||||||||||| ||||    
T  38309814 tcaaaatcagatgcgacagtggtaatgggaaaactt 38309779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 300
Target Start/End: Complemental strand, 38317942 - 38317790
Alignment:
Q  148 agattaccatcactaacgaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgc 247  Q
    ||||||||||| || || |||||||| | ||||||||||| ||| |||||||||||||||| | | |||| | ||||||||| |||||||||||| || |    
T  38317942 agattaccatcgcttacaaaattgtataaccaactgcgagtacagattctagtttccacattcgtgggcagcgtacgatcttcatacttgttaaagacac 38317843  T
Q  248 atgagcccatgcaaaattcaaaatcagaagccacagtggtaatgggaacactt 300  Q
     ||| ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  38317842 gtgaacccatgcaaaattcagaatcagaagcaacagtggcaatgggaacactt 38317790  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 38322040 - 38321879
Alignment:
Q  139 aaattacacagattaccatcactaacgaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgt 238  Q
    |||||||  ||||||||||| | ||| |||||||||| |||| |||||| ||||| |||||  |||| || |||||| ||||||||||||||||||||||    
T  38322040 aaattacgtagattaccatcgcgaacaaaattgtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgt 38321941  T
Q  239 taaacacgcatgagcccatgcaaaattcaaaatcagaagccacagtggtaatgggaacactt 300  Q
    |||| |||    |||| |||||||| || ||||||||||| | |||| ||| ||||||||||    
T  38321940 taaaaacgtgcaagcctatgcaaaaatccaaatcagaagcgatagtgttaacgggaacactt 38321879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 38326725 - 38326591
Alignment:
Q  166 aaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcatgagcccatgcaaaatt 265  Q
    |||||||||| |||||||| || ||| ||||| | |||||||| ||| |||| |||| | ||||||||||| | ||| |||| ||  |||||||||||||    
T  38326725 aaattgtacaaccaactgcaagtacagattctggcttccacattcataggcagcataaggtctttatacttttcaaatacgcgtgcacccatgcaaaatt 38326626  T
Q  266 caaaatcagaagccacagtggtaatgggaacactt 300  Q
    | |||||||| || ||||||| |||||||||||||    
T  38326625 ccaaatcagatgcgacagtggcaatgggaacactt 38326591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 38326832 - 38326780
Alignment:
Q  71 atcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaaca 123  Q
    |||| ||||||||||||||| |||  ||| |||| ||||||||||||||||||    
T  38326832 atcaaaattgaagaggttaataattaaatagacctgtggttatcaaaacaaca 38326780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 38849412 - 38849546
Alignment:
Q  166 aaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcatgagcccatgcaaaatt 265  Q
    |||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  38849412 aaattgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaatt 38849511  T
Q  266 caaaatcagaagccacagtggtaatgggaacactt 300  Q
    || |||||||||| |||| || |||||||||||||    
T  38849512 cagaatcagaagctacagcggcaatgggaacactt 38849546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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