View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2575_low_1 (Length: 565)
Name: NF2575_low_1
Description: NF2575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2575_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 22 - 550
Target Start/End: Original strand, 53869853 - 53870381
Alignment:
| Q |
22 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53869853 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
53869952 |
T |
|
| Q |
122 |
tacccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttag |
221 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53869953 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattccatgttttctagttttag |
53870052 |
T |
|
| Q |
222 |
ctataactcatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatgtactaagatggaaatttgtttaaagaaaaaatttgttacccaatttct |
321 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53870053 |
ctgtaacttctatgggtcttctaagatgttttttaatttttattatgtcatagactaagatgaaaatttgtttaaagaaaaaatttgcaacccaatttct |
53870152 |
T |
|
| Q |
322 |
acttcaaccgtaaatttcgtatgaactcagttgcaaatgttatcaaagtgtaattgcaaaaacgtgaaatgggaagatgatagatagaaatcagaatgaa |
421 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
53870153 |
acttcaaccataaatttcatatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaa |
53870252 |
T |
|
| Q |
422 |
cgaacaaagcagtcgccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctcaa |
521 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
53870253 |
cgaacaaagcagtcaccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttataccattttttttatacaacttctcca |
53870352 |
T |
|
| Q |
522 |
agaaatatttttgcaagagcaaatgaaag |
550 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
53870353 |
ggaaataattttgcaagagcaaatgaaag |
53870381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 22 - 550
Target Start/End: Complemental strand, 625285 - 624758
Alignment:
| Q |
22 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
121 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
625285 |
taatggtggctcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagtatttctaatttcagttgca |
625186 |
T |
|
| Q |
122 |
tacccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttag |
221 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
625185 |
tacccatcatcttcta-acaaccactcattgtttctcttacatcccaactcctcagcaagtgtattttaccaaatacaattccatgttttctagttttag |
625087 |
T |
|
| Q |
222 |
ctataactcatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatgtactaagatggaaatttgtttaaagaaaaaatttgttacccaatttct |
321 |
Q |
| |
|
| ||||| |||||||||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||| |
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|
| T |
625086 |
ttgtaacttgtatgggtcttctaagatgttttttaatttttattatgtcatagactaagatgaaaatttgtttaaaaaaaaaatttgcaacccaatttct |
624987 |
T |
|
| Q |
322 |
acttcaaccgtaaatttcgtatgaactcagttgcaaatgttatcaaagtgtaattgcaaaaacgtgaaatgggaagatgatagatagaaatcagaatgaa |
421 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
624986 |
acttcaaccataaatttcgtatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatgaa |
624887 |
T |
|
| Q |
422 |
cgaacaaagcagtcgccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctcaa |
521 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
624886 |
cgaacaaagcagtcaccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttataccattttttttatacaacttctcca |
624787 |
T |
|
| Q |
522 |
agaaatatttttgcaagagcaaatgaaag |
550 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
624786 |
ggaaataattttgcaagagcaaatgaaag |
624758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 22 - 550
Target Start/End: Original strand, 5277628 - 5278156
Alignment:
| Q |
22 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5277628 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgca |
5277727 |
T |
|
| Q |
122 |
tacccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttag |
221 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5277728 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaattcctcagcaagtgttttttaccaaatacaattccatgttttctagttttag |
5277827 |
T |
|
| Q |
222 |
ctataactcatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatgtactaagatggaaatttgtttaaagaaaaaatttgttacccaatttct |
321 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5277828 |
ctgtaacttttatgggtcttctaagatgttttttaatttttattatgtcatagactaagatgaaaatttgtttaaagaaaaaatttgcaacccaatttct |
5277927 |
T |
|
| Q |
322 |
acttcaaccgtaaatttcgtatgaactcagttgcaaatgttatcaaagtgtaattgcaaaaacgtgaaatgggaagatgatagatagaaatcagaatgaa |
421 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| |
|
|
| T |
5277928 |
acttcaaccataaatttcttatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaatattaagattatagaaaggaatcagaatgaa |
5278027 |
T |
|
| Q |
422 |
cgaacaaagcagtcgccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctcaa |
521 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
5278028 |
cgaacaaagcagtcaccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttatatcattttttttatacaacttctcca |
5278127 |
T |
|
| Q |
522 |
agaaatatttttgcaagagcaaatgaaag |
550 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
5278128 |
gaaaataattttgcaagagcaaatgaaag |
5278156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 22 - 550
Target Start/End: Original strand, 40727171 - 40727691
Alignment:
| Q |
22 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40727171 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgca |
40727270 |
T |
|
| Q |
122 |
tacccatcatcttttagacaaccactcattgtttctcctacatcccaactcctctgcaagtgttttttaccaaatacaattccatgttttctagttttag |
221 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
40727271 |
tacccatcatcttctagacaacccctcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaatttcatattttctagttttag |
40727370 |
T |
|
| Q |
222 |
ctataactcatatgggtcttctaagatgnnnnnnnnnnnnnattatgtcatgtactaagatggaaatttgtttaaagaaaaaatttgttacccaatttct |
321 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
40727371 |
ctgtaacttgtatgggtcttctaagatgttttttaatttttattatgtc--------agatgaaaatttgttcaaagaaaaaatttgcaacccaatttct |
40727462 |
T |
|
| Q |
322 |
acttcaaccgtaaatttcgtatgaactcagttgcaaatgttatcaaagtgtaattgcaaaaacgtgaaatgggaagatgatagatagaaatcagaatgaa |
421 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||| |
|
|
| T |
40727463 |
acttcaaccataaatttcgtatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataagaagataatagaaaggaatcagaatgaa |
40727562 |
T |
|
| Q |
422 |
cgaacaaagcagtcgccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttataccannnnnnnnatacaacttctcaa |
521 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
40727563 |
cgaacaaagcagtcaccaccaatgactttgaaaacttaatcttgagaagaaaatattgtttaaattcaacttatactattttttttatacaacttctcca |
40727662 |
T |
|
| Q |
522 |
agaaatatttttgcaagagcaaatgaaag |
550 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
40727663 |
ggaaataattttgcaagagcaaatgaaag |
40727691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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