View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2575_low_2 (Length: 532)

Name: NF2575_low_2
Description: NF2575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2575_low_2
NF2575_low_2
[»] chr6 (1 HSPs)
chr6 (65-412)||(35209229-35209576)
[»] chr1 (3 HSPs)
chr1 (263-368)||(19937584-19937689)
chr1 (261-362)||(52963449-52963550)
chr1 (417-476)||(52963303-52963362)
[»] chr4 (5 HSPs)
chr4 (384-509)||(33833925-33834048)
chr4 (261-365)||(33834098-33834202)
chr4 (261-362)||(37917556-37917657)
chr4 (384-509)||(37917711-37917834)
chr4 (417-465)||(7567302-7567350)
[»] chr2 (2 HSPs)
chr2 (265-352)||(30180183-30180269)
chr2 (261-342)||(30781731-30781812)
[»] chr8 (2 HSPs)
chr8 (384-478)||(36999991-37000085)
chr8 (261-365)||(37000136-37000240)
[»] chr3 (1 HSPs)
chr3 (413-466)||(55250608-55250661)
[»] chr7 (1 HSPs)
chr7 (417-465)||(8984034-8984082)


Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 65 - 412
Target Start/End: Complemental strand, 35209576 - 35209229
Alignment:
Q  65 gctaaatgttttgatacactaccaattttgtgggacgtattttcaaccataaacatcaatgttattttgcgatatatgatcactctatgttgtctgtcct 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35209576 gctaaatgttttgatacactaccaattttgtgggacgtattttcaaccataaacatcactgttattttgcgatatatgatcactctatgttgtctgtcct 35209477  T
Q  165 ggatagcgggggtggcatattttaaaattgggaaagcagggtacgggatgactctcatttaatatatttaggaaatatttggtttggaaatgtctaaata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209476 ggatagcgggggtggcatattttaaaattgggaaagcagggtacgggatgactctcatttaatatatttaggaaatatttggtttggaaatgtctaaata 35209377  T
Q  265 aatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatgaacg 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209376 aatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatgaacg 35209277  T
Q  365 tctacaaagctatttgctaaataactttgctttatttttcaaaccaaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209276 tctacaaagctatttgctaaataactttgctttatttttcaaaccaaa 35209229  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 19937584 - 19937689
Alignment:
Q  263 taaatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatgaa 362  Q
    ||||||||| |||||||||||||| ||||||||||||| ||  | ||| |||||||||||||  || |||||||||||||| | |||||||| |||||||    
T  19937584 taaatgttgctttaggtctttaatgccttcttgatcatcacaagtaataacaatatcatctaaatataccacaagataaatgactttgttcaaagatgaa 19937683  T
Q  363 cgtcta 368  Q
    ||||||    
T  19937684 cgtcta 19937689  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 52963550 - 52963449
Alignment:
Q  261 aataaatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatg 360  Q
    |||||||| || |||||||||||||| | ||||||||||||||| | ||| |||||||||||||| || || || | ||| || | |||||||| |||||    
T  52963550 aataaatgctgctttaggtctttaatgcgttcttgatcattaccggtaataacaatatcatctacatatacaaccaaatagatgactttgttcaaagatg 52963451  T
Q  361 aa 362  Q
    ||    
T  52963450 aa 52963449  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 52963362 - 52963303
Alignment:
Q  417 aggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccc 476  Q
    ||||||||| || | ||||||||||||||| |||||| |||||||||||||  |||||||    
T  52963362 aggtgattgttttaaaccatacaatgatttttgtaacatgcaaacaaggccatactcccc 52963303  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 384 - 509
Target Start/End: Complemental strand, 33834048 - 33833925
Alignment:
Q  384 aataactttgctttatttttcaaaccaaactcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccctgtgagc 483  Q
    |||||| |||||  ||||| |||||||| ||| ||||||||| || ||||||||||||||||| |||||| |||||||||||||| |||||||  |||||    
T  33834048 aataaccttgctgaattttccaaaccaagctcgaggtgattgttttagaccatacaatgatttttgtaacttgcaaacaaggccgtactcccc-ctgagc 33833950  T
Q  484 aaataaaactagatggttgctccata 509  Q
     |||||| | || |||||||||||||    
T  33833949 -aataaagccaggtggttgctccata 33833925  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 33834202 - 33834098
Alignment:
Q  261 aataaatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatg 360  Q
    |||||||| || |||||||||||||| ||||| ||||||||||| | ||| ||||| |||||||| || || ||||||||||| | || ||||| |||||    
T  33834202 aataaatgctgctttaggtctttaatgccttcctgatcattaccagtaataacaatgtcatctacatatactacaagataaatgacttggttcaaagatg 33834103  T
Q  361 aacgt 365  Q
    |||||    
T  33834102 aacgt 33834098  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 362
Target Start/End: Original strand, 37917556 - 37917657
Alignment:
Q  261 aataaatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatg 360  Q
    |||||||| || |||||||||||||| ||||| ||||||||||| | ||| ||||| |||||||| || || ||||||||||| | || ||||| |||||    
T  37917556 aataaatgctgctttaggtctttaatgccttcctgatcattaccagtaataacaatgtcatctacatatactacaagataaatgacttggttcaaagatg 37917655  T
Q  361 aa 362  Q
    ||    
T  37917656 aa 37917657  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 509
Target Start/End: Original strand, 37917711 - 37917834
Alignment:
Q  384 aataactttgctttatttttcaaaccaaactcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccctgtgagc 483  Q
    |||||| |||||  ||||| |||||||| ||  ||||||||| || ||||||||||||||||| |||||| |||||||||||||  || ||||| |||||    
T  37917711 aataaccttgctgaattttccaaaccaagcttgaggtgattgttttagaccatacaatgatttttgtaacttgcaaacaaggccatacccccct-tgagc 37917809  T
Q  484 aaataaaactagatggttgctccata 509  Q
     |||||| | || |||||||||||||    
T  37917810 -aataaagccaggtggttgctccata 37917834  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 7567302 - 7567350
Alignment:
Q  417 aggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaagg 465  Q
    ||||||||| || ||||||||||||||||| ||| || |||||||||||    
T  7567302 aggtgattgatttagaccatacaatgatttttgttacttgcaaacaagg 7567350  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 30180269 - 30180183
Alignment:
Q  265 aatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgtt 352  Q
    ||||||||||||| |||||||| ||||||| ||||||||| | ||| |||||||||| ||| || |||||||||||||| | ||||||    
T  30180269 aatgttgttttagatctttaatgccttctt-atcattaccggtaataacaatatcatttacatataccacaagataaatgactttgtt 30180183  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 30781731 - 30781812
Alignment:
Q  261 aataaatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaa 342  Q
    ||||||||||||||||| | |||||| ||||||||||||||||  | ||| |||||||||| ||| || || ||||||||||    
T  30781731 aataaatgttgttttagatttttaatgccttcttgatcattactagtaataacaatatcatttacatatacgacaagataaa 30781812  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 478
Target Start/End: Complemental strand, 37000085 - 36999991
Alignment:
Q  384 aataactttgctttatttttcaaaccaaactcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggccgaactcccctg 478  Q
    |||||| |||||  ||||| |||||||| ||| ||||||||| || ||||||||||||||||| |||||| || |||||||  || |||||||||    
T  37000085 aataaccttgctgaattttccaaaccaagctcgaggtgattgttttagaccatacaatgatttttgtaacttgaaaacaagatcgtactcccctg 36999991  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 37000240 - 37000136
Alignment:
Q  261 aataaatgttgttttaggtctttaataccttcttgatcattacctgaaatgacaatatcatctacttacaccacaagataaataagtttgttcacagatg 360  Q
    |||||| |||| |||||||||||||| |||||||||||||| || |  || ||||| |||||||| || || ||||||||||| | |  ||||| |||||    
T  37000240 aataaacgttgctttaggtctttaatgccttcttgatcattgccagtgataacaatgtcatctacatatactacaagataaatgactgggttcaaagatg 37000141  T
Q  361 aacgt 365  Q
    |||||    
T  37000140 aacgt 37000136  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 466
Target Start/End: Original strand, 55250608 - 55250661
Alignment:
Q  413 ctcaaggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaaggc 466  Q
    |||||||||||| ||| ||||||||||| ||||| | |||||| ||||||||||    
T  55250608 ctcaaggtgattactttagaccatacaaggatttttataacctacaaacaaggc 55250661  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 8984082 - 8984034
Alignment:
Q  417 aggtgattgcttaagaccatacaatgatttgtgtaacctgcaaacaagg 465  Q
    ||||||||| || ||||||||||||||||| ||| || |||||||||||    
T  8984082 aggtgattgatttagaccatacaatgatttttgttacttgcaaacaagg 8984034  T

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