View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2575_low_3 (Length: 407)
Name: NF2575_low_3
Description: NF2575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2575_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 15505695 - 15506079
Alignment:
| Q |
17 |
acgaaggaccccgcaatcacattgcggcttaaacagaattgcttccattctccttgaattttgtagtgcggttttttggaactgacaaaagattgagtac |
116 |
Q |
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| T |
15505695 |
acgaaggacccagcaatcacattgcagcttaaacaaaattgcttccattctccttgaattttgtagtgcggttctttggaactgacaaaagattgagtgc |
15505794 |
T |
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| Q |
117 |
aactccagacatggtcggtgtcatctgttaaatagaactccttggtatctatgggcatcacagagttcaaaaaactatcatatgaaagggtctgtaaaaa |
216 |
Q |
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| T |
15505795 |
aactccagacatggccggtgtcatctgttaaatagaagtccttggtatctatggccatcacagagttcaaaaaactatcatatgaaagggtctgtaaaaa |
15505894 |
T |
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| Q |
217 |
cacaaaaacagttgtta-----------gtgacattaatggctaaagttgaatgatatcagaagacaaaaagggcaacacaatacaaggaaaccttttgt |
305 |
Q |
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| T |
15505895 |
catcaaaacaattgttagtgacattggggtgacattaatggctaaagttgaatgatatcagaagacaaaaagggcaacaccataccaggaaaccttttga |
15505994 |
T |
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| Q |
306 |
taactcctcaacaatcaaccatttggagaaactaaacttgaagttattagggtcatgtctatatgggaaaattttatgggcagtg |
390 |
Q |
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| T |
15505995 |
aaactcctcaacagtcaaccatttggagaaactaaacttgaagttattagggtcatgtctataccggataattttatgggcagtg |
15506079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 34705751 - 34705568
Alignment:
| Q |
25 |
ccccgcaatcacattgcggcttaaacagaattgcttccattctccttgaattttgtagtgcggttttttggaactgacaaaagattgagtacaactccag |
124 |
Q |
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| T |
34705751 |
ccccgcagtcaccttacggcttaaacagaa-tgcttccattcaccctctattttgtagtgcgg-ttcctggaacggacagaagcttgggtgcaaatccac |
34705654 |
T |
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| Q |
125 |
acatggtcggtgtcatctgttaaatagaactccttggtatctatgggcatcacagagttcaaaaaactatcatatgaaagggtctg |
210 |
Q |
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| T |
34705653 |
acgtgacccgcatgatctttcaaatagaagtccttggtgtttactggcataacagagttcagaactctgtcatatgaaagggtctg |
34705568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 28547450 - 28547633
Alignment:
| Q |
25 |
ccccgcaatcacattgcggcttaaacagaattgcttccattctccttgaattttgtagtgcggttttttggaactgacaaaagattgagtacaactccag |
124 |
Q |
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| T |
28547450 |
ccccgcagtcaccttacggcttaaacagaa-tgcttccattcaccctctattttgtagtgcgg-ttcctggaacggacagaagcttgggtgcaaatccac |
28547547 |
T |
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| Q |
125 |
acatggtcggtgtcatctgttaaatagaactccttggtatctatgggcatcacagagttcaaaaaactatcatatgaaagggtctg |
210 |
Q |
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| T |
28547548 |
acgtgacccgcatgatctttcaaatagaagtccttggtgtttactggcataacagagttcagaactctgtcatatgaaagggtctg |
28547633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 41868960 - 41868777
Alignment:
| Q |
25 |
ccccgcaatcacattgcggcttaaacagaattgcttccattctccttgaattttgtagtgcggttttttggaactgacaaaagattgagtacaactccag |
124 |
Q |
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| T |
41868960 |
ccccgcagtcaccttacggcttaaacagaa-tgcttccattcaccctctattttgtagtgcgg-ttcctggaacggacagaagcttgggtgcaaatccac |
41868863 |
T |
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| Q |
125 |
acatggtcggtgtcatctgttaaatagaactccttggtatctatgggcatcacagagttcaaaaaactatcatatgaaagggtctg |
210 |
Q |
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| T |
41868862 |
acgtgacccgcatgatctttcaaatagaagtccttggtgtttactggcataacagagttcagaactctgtcatatgaaagggtctg |
41868777 |
T |
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