View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2575_low_4 (Length: 405)
Name: NF2575_low_4
Description: NF2575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2575_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 3778642 - 3778271
Alignment:
| Q |
19 |
gttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778642 |
gttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactctttt |
3778543 |
T |
|
| Q |
119 |
tgcatttaccgacacttcatgaacaagtttcaggtgaatacaaagatcacaccgaccctattcagattccgggttgtatccctattcatggccaagatct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778542 |
tgcatttaccgacacttcatgaacaagtttcaggtgaatacaaagatcacaccgaccctattcagattccgggttgtatccctattcatggccaagatct |
3778443 |
T |
|
| Q |
219 |
ccctcctgaattttttcatgatcgatctagtcctgcttacggnnnnnnncttctacattccaagaacttttctcttgctcatggtttcttggtgaatagt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778442 |
ccctcctgaattttttcatgatcgatctagtcctgcttacggtttttttcttctacattccaagaacttttctcttgctcatggtttcttggtgaatagt |
3778343 |
T |
|
| Q |
319 |
ttctcaaaaatggaggcaagtacagcgagagccttgcagaaaatgcacaacaatagcacccaattagtctat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3778342 |
ttctcaaaaatggaggcaagtacagcgagagccttgcagaaaatgcacaacaatagcacccaattagtctat |
3778271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 3707214 - 3707587
Alignment:
| Q |
19 |
gttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactctttt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||| | | |
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| T |
3707214 |
gttgatccttttgcaagtcaagcattagaaatagctaaagacttgaacctcttatcttttgtatatttcccactttctgccatgataacttcattacact |
3707313 |
T |
|
| Q |
119 |
tgcatttaccgacacttcatgaacaagtttcaggtgaatacaaagatcacaccgaccctattcagattccgggttgtatccctattcatggccaagatct |
218 |
Q |
| |
|
| ||| |||||||| ||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||| | ||||||| ||| ||||||| |
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|
| T |
3707314 |
tctattgtccgacactgcataaacaagtttcatgtgaatacaaagatcacactgaccttattcagattccgggatgtctacctattctcggcaaagatct |
3707413 |
T |
|
| Q |
219 |
ccctcctgaattttttcatgatcgatctagtcctgcttacggnnnnnnncttctacattccaagaacttttctcttgctcatggtttcttggtgaatagt |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
3707414 |
tcctcccgaattttttcatgatcgatctagtgttgcttacagtatttttcttctacattccaagaacttgtctcttgctcatggtttcttggcgaatagt |
3707513 |
T |
|
| Q |
319 |
ttctcaaaaatggaggcaagtacagcgagagccttgcagaaaatgcacaacaatagcacccaattagtctatat |
392 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | ||||||||| | |||| ||||||| ||||| |
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|
| T |
3707514 |
ttctcaaaaatggaggcaagtacagggagagccttgcaggaggagcacaacaaaaccaccaaattagtttatat |
3707587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 3770981 - 3770608
Alignment:
| Q |
19 |
gttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactctttt |
118 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||| || | |
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|
| T |
3770981 |
gttgatccttatgcaagtcaagcattagaaatagcaaaagactagaacatcttatcttttgtatactttccactttctgccatgacaacttcattcaact |
3770882 |
T |
|
| Q |
119 |
tgcatttaccgacacttcatgaacaagtttcaggtgaatacaaagatcacaccgaccctattcagattccgggttgtatccctattcatggccaagatct |
218 |
Q |
| |
|
|| |||| ||| |||| ||||||||||||||| |||||||||||||||| || |||| ||||||| ||||||||||| | |||||| | |||||||||| |
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|
| T |
3770881 |
tgtattttccggcactgcatgaacaagtttcatgtgaatacaaagatcatactgaccttattcagtttccgggttgtctacctatttgtagccaagatct |
3770782 |
T |
|
| Q |
219 |
ccctcctgaattttttcatgatcgatctagtcctgcttacggnnnnnnncttctacattccaagaacttttctcttgctcatggtttcttggtgaatagt |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||| | |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3770781 |
tcctcccgaattttttcatgatcgatctagtgttcgttacagtttttttcttctacattccaagaacttgtctcttgctcatggtttcttggtgaatagt |
3770682 |
T |
|
| Q |
319 |
ttctcaaaaatggaggcaagtacagcgagagccttgcagaaaatgcacaacaatagcacccaattagtctatat |
392 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||| | ||||||||| | |||| ||||||| ||||| |
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|
| T |
3770681 |
ttctcaaaaatggaggctagtacagggagagccttgcaggaggagcacaacaaaaccaccaaattagtttatat |
3770608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 3718723 - 3719061
Alignment:
| Q |
19 |
gttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactctttt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| || | |
|
|
| T |
3718723 |
gttgatccttttgcaagtcaagcattagaaatagctaaagacttgaacctcttatcttttatatacttcccactttctgccatgataacttcattcaact |
3718822 |
T |
|
| Q |
119 |
tgcatttaccgacacttcatgaacaagtttcaggtgaatacaaagatcacaccgaccctattcagattccgggttgtatccctattcatggccaagatct |
218 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||| |||||| | ||||||| ||||||||||| |
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|
| T |
3718823 |
tgtattttccgacactgcatgaacaagtttcatgtgaatacaaagatcacattgatcctattcagattccaggttgtctacctattcgaggccaagatct |
3718922 |
T |
|
| Q |
219 |
ccctcctgaattttttcatgatcgatctagtcctgcttacggnnnnnnncttctacattccaagaacttttctcttgctcatggtttcttggtgaatagt |
318 |
Q |
| |
|
||||| ||||||||||||||||| ||| | | |||| |||| ||||| ||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
3718923 |
tcctcccgaattttttcatgatcgttcttgcgttccttataagctttttcttcaacattgcaaaaactcgtctcttgctcatggtttcttggtgaatagt |
3719022 |
T |
|
| Q |
319 |
ttctcaaaaatggaggcaagtacagcgagagccttgcag |
357 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3719023 |
ttctcaaaaatggaggcaagtacagggagagccttgcag |
3719061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 33005872 - 33005538
Alignment:
| Q |
19 |
gttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactctttt |
118 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| || ||| ||||||||||| | |||||||| ||||||||||| ||||||||| | |
|
|
| T |
33005872 |
gttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatgacaacttcactacact |
33005773 |
T |
|
| Q |
119 |
tgcatttaccgacacttcatgaacaagtttcaggtgaatacaaagatcacaccgaccctattcagattccgggttgtatccctattcatggccaagatct |
218 |
Q |
| |
|
||||||| || | |||| | ||||||||||| ||||| |||| |||||| || |||||| | ||||||||||| | ||||||| ||||||||||| |
|
|
| T |
33005772 |
tgcatttgccaatacttgacgaacaagtttcgggtgagtacatggatcacgttgaacctattgaaattccgggttgcacacctattcgcggccaagatct |
33005673 |
T |
|
| Q |
219 |
ccctcctgaattttttcatgatcgatctagtcctgcttacggnnnnnnncttctacattccaagaacttttctcttgctcatggtttcttggtgaatagt |
318 |
Q |
| |
|
||||| | |||||| | ||||| |||||| |||||||| |||| ||| |||||| || ||||||||| ||||| | ||| | ||||| |
|
|
| T |
33005672 |
ccctcgtactttttttgaagatcggtctagtattgcttacgagacaattcttcgacaaaccaagagattctctcttgctgatggtgtattgattaatagc |
33005573 |
T |
|
| Q |
319 |
ttctcaaaaatggaggcaagtacagcgagagcctt |
353 |
Q |
| |
|
|||||| ||||||||| ||| |||| ||||||||| |
|
|
| T |
33005572 |
ttctcagaaatggaggaaagcacagtgagagcctt |
33005538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 3700557 - 3700769
Alignment:
| Q |
40 |
gcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactctttttgcatttaccgacacttcatg |
139 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||||||| || || | || | ||||| || ||||| || | |
|
|
| T |
3700557 |
gcattagaaatagcaaaagagttcaacctcttatctttcatatactttccactttctgccatggcaatgtctttgttgtcacatttgccaacactgcacg |
3700656 |
T |
|
| Q |
140 |
aacaagtttcaggtgaatacaaagatcacaccgaccctattcagattccgggttgta---tccctattcatggccaagatctccctcctgaattttttca |
236 |
Q |
| |
|
|| || |||| |||||||||||||||||| || ||||||||| | || || || | | ||||||||||||||||||||| |||| | ||| |||| |
|
|
| T |
3700657 |
aaaaattttcgtgtgaatacaaagatcacattgagcctattcagttccccggctgcaacgtacctattcatggccaagatctcattcctaattttcttca |
3700756 |
T |
|
| Q |
237 |
tgatcgatctagt |
249 |
Q |
| |
|
||||| |||||| |
|
|
| T |
3700757 |
cgatcggtctagt |
3700769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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