View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2575_low_5 (Length: 353)
Name: NF2575_low_5
Description: NF2575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2575_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 26306160 - 26305987
Alignment:
| Q |
19 |
ggtggagaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcgtgttcttcatcttgctcgaa |
118 |
Q |
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| T |
26306160 |
ggtggagaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcgtgttcttcatcttgctcgaa |
26306061 |
T |
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| Q |
119 |
acggtgtttatctcagaggtaaaaactcgtttatgttccatattttcattcaatttgttctgtactggctctgat |
193 |
Q |
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| T |
26306060 |
acggtgtttatctcagaggt-aaaactcgtttatgttccatattttcattcaatttgttctgtactggctctgat |
26305987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 26305958 - 26305894
Alignment:
| Q |
189 |
ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa |
253 |
Q |
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| T |
26305958 |
ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa |
26305894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 26305898 - 26305842
Alignment:
| Q |
279 |
cacaatcatatttgtagctgcatttgtcagcattttagaactatactgtcacaattg |
335 |
Q |
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| T |
26305898 |
cacaatcatatttgtagctgcatttgtcagcattttagaactatgctgtcacaattg |
26305842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 781550 - 781445
Alignment:
| Q |
28 |
gttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcgtgttcttcatcttgctcgaaacggtgttt |
127 |
Q |
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||||||| |||||| ||||| |||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||| ||| ||| || |||| |
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| T |
781550 |
gttagaatgcttcatataatgtacttccttagtcacatgcgtggtcattcagaacagcctcatctctttcgtgttcttcatctagcttcaaatggagttt |
781451 |
T |
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| Q |
128 |
atctca |
133 |
Q |
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|||||| |
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| T |
781450 |
atctca |
781445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 46209431 - 46209322
Alignment:
| Q |
25 |
gaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcgtgttcttcatcttgctcgaaacggtg |
124 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||| || ||||||| ||||||||| ||| |||| ||||| || |
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| T |
46209431 |
gaagttagaaggcttcacataatctgcttatttagctacatgggtggttttgcagaacattatcgtctcattagtgttcttcgtctagctcaaaacgatg |
46209332 |
T |
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| Q |
125 |
tttatctcag |
134 |
Q |
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|||||||||| |
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| T |
46209331 |
tttatctcag |
46209322 |
T |
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