View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2576_low_2 (Length: 409)
Name: NF2576_low_2
Description: NF2576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2576_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 50275567 - 50275957
Alignment:
| Q |
1 |
ggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275567 |
ggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtgg |
50275666 |
T |
|
| Q |
101 |
tagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacg |
196 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275667 |
tagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacg |
50275766 |
T |
|
| Q |
197 |
gcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggt |
296 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275767 |
gcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggt |
50275866 |
T |
|
| Q |
297 |
gtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacac |
387 |
Q |
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| T |
50275867 |
gtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacac |
50275957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 50279591 - 50279981
Alignment:
| Q |
1 |
ggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279591 |
ggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtgg |
50279690 |
T |
|
| Q |
101 |
tagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacg |
196 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279691 |
tagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacg |
50279790 |
T |
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| Q |
197 |
gcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggt |
296 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279791 |
gcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggt |
50279890 |
T |
|
| Q |
297 |
gtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacac |
387 |
Q |
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| T |
50279891 |
gtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacac |
50279981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 14462668 - 14462526
Alignment:
| Q |
245 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462668 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
14462569 |
T |
|
| Q |
345 |
atgctcttcaacttgtataattcatcataatgtaccatgacac |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462568 |
atgctcttcaacttgtataattcatcataatgtaccatgacac |
14462526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 22610283 - 22610166
Alignment:
| Q |
235 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagc |
334 |
Q |
| |
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|||||||||||| ||| |||||||| ||| ||||| |||| || ||| |||||||| | |||||||||||||||||| | || |||||||||||||||| |
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| T |
22610283 |
tcaccttgagaatttcagatgaacgaaatgcaccatgccaaataaaaaatctttctactggtgtcttccacaacccatagagcatgtgaaatacatcagt |
22610184 |
T |
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| Q |
335 |
ctttgcacctatgctctt |
352 |
Q |
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|||||| ||||||||||| |
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| T |
22610183 |
ctttgcccctatgctctt |
22610166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 14931491 - 14931420
Alignment:
| Q |
235 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccaca |
306 |
Q |
| |
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|||||||||||||||| || || || || ||||||||||| | |||||| ||||| |||||||| ||||||| |
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| T |
14931491 |
tcaccttgagaagttcagacgaccgaaaaccaccaagccataagaaacacctttcagcaggtgttttccaca |
14931420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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