View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2576_low_4 (Length: 325)
Name: NF2576_low_4
Description: NF2576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2576_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 2180864 - 2180689
Alignment:
| Q |
61 |
cagttgttattgttaataatttctccgtcaccagagttcgaatccagttcctttaactccttataacatgnnnnnnnntgtccaagttcagcagaaaggg |
160 |
Q |
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| T |
2180864 |
cagttgttattgttaataatttctccgtcaccagagtccgaacccagttcctttaactccttataacatgaaaaagaatgtccaagttcagcagaaaggg |
2180765 |
T |
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| Q |
161 |
aatggacaaacacacacgcgcgcagacatacacaaggtaaaatacccttctcatcatcaacattcagcaacgtatc |
236 |
Q |
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| T |
2180764 |
aatggacaaacacacacgctcgcagacatacacaaggtaaaatacccttctcatcatcaacattcagcaacgtatc |
2180689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 2180980 - 2180935
Alignment:
| Q |
18 |
tgcactatatgtaagtgacaaacaaaaagtaagccaacataaacag |
63 |
Q |
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| T |
2180980 |
tgcactatatgtaagtgacaaacaaaaagtaagccaacataaacag |
2180935 |
T |
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