View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2576_low_6 (Length: 238)
Name: NF2576_low_6
Description: NF2576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2576_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48608342 - 48608563
Alignment:
| Q |
1 |
aaaatgaaaatgaaaggtgagtggtctcatttgattgaagctctttaagcaagacacacacattgatacaattacagcatgaaactttaaataaatttct |
100 |
Q |
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| T |
48608342 |
aaaatgaaaatgaaaggtgagtggtctcatttgattgaagctctttaagcaagacacacacattgatacaattacagcatgaaagtttaaataaatttct |
48608441 |
T |
|
| Q |
101 |
catttctgttgnnnnnnntaatatccccacannnnnnnagaattataatattcctctaattagagacaaatttataatgaaaaatcgacggcaaagagta |
200 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48608442 |
catttctgttgaaaaaaataatatccccacatttttttagaattataatattcctctaattagagacaaatttataatgaaaaatcgacggcaaagagta |
48608541 |
T |
|
| Q |
201 |
aaagagtgatctatgtacaaga |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48608542 |
aaagagtgatctatgtacaaga |
48608563 |
T |
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