View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2577_high_10 (Length: 253)

Name: NF2577_high_10
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2577_high_10
NF2577_high_10
[»] chr7 (1 HSPs)
chr7 (14-241)||(18977096-18977323)
[»] chr2 (2 HSPs)
chr2 (14-241)||(24933924-24934151)
chr2 (181-241)||(11007319-11007379)
[»] chr6 (1 HSPs)
chr6 (14-199)||(9366219-9366405)
[»] chr5 (2 HSPs)
chr5 (181-241)||(6476695-6476755)
chr5 (181-241)||(10554634-10554694)
[»] chr4 (2 HSPs)
chr4 (181-241)||(19080473-19080533)
chr4 (201-241)||(46168225-46168265)
[»] chr3 (1 HSPs)
chr3 (14-82)||(11349264-11349332)
[»] chr1 (1 HSPs)
chr1 (192-234)||(8548914-8548956)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 18977323 - 18977096
Alignment:
Q  14 gcaaaggagcagccaattactcttctaggtgtgaataattggtgattgtatagtagataatttgagaccgattagaagaaacgattcttgaataagtggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18977323 gcaaaggagcagccaattactcttctaggtgtgaataattggtgactgtatagtagataatttgagaccgattagaagaaacgattcttgaataagtggt 18977224  T
Q  114 ggttgattacattgttggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgcatcaagaaag 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18977223 ggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgcatcaagaaag 18977124  T
Q  214 ttgaaaatttatggagaccatttgatga 241  Q
    ||||||||||||||||||||||| ||||    
T  18977123 ttgaaaatttatggagaccatttaatga 18977096  T

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Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 24934151 - 24933924
Alignment:
Q  14 gcaaaggagcagccaattactcttctaggtgtgaataattggtgattgtatagtagataatttgagaccgattagaagaaacgattcttgaataagtggt 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24934151 gcaaaggagcaaccaattactcttctaggtgtgaataattggtgattttatagtagataatttgagaccgattagaagaaacgattcctgaataagtggt 24934052  T
Q  114 ggttgattacattgttggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgcatcaagaaag 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24934051 ggttgattacattgctggtctttcaagcactaattgatacaaagcgatattcatttaccttaaatgaaaataaagagcatgattctatgcatcaagaaag 24933952  T
Q  214 ttgaaaatttatggagaccatttgatga 241  Q
    || |||||||||||||||||||| ||||    
T  24933951 ttaaaaatttatggagaccatttaatga 24933924  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 11007379 - 11007319
Alignment:
Q  181 aaataaagagcatgattctatgcatcaagaaagttgaaaatttatggagaccatttgatga 241  Q
    ||||| ||||| ||||||  ||||||||||||||||||||||| |||||||||||| ||||    
T  11007379 aaatagagagcgtgattcggtgcatcaagaaagttgaaaatttgtggagaccatttaatga 11007319  T

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Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 9366219 - 9366405
Alignment:
Q  14 gcaaaggagcagccaattactcttctaggtgtgaataattggtgattgtatagtagataatttgagaccgattagaagaaacgattcttgaataagtggt 113  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9366219 gcaaaggagcagccaattactcttctgggtgtgaataattggtcattgtatagtagataatttgagaccgattagaagaaacgattcttgaataagtggt 9366318  T
Q  114 ggttgattacattgttggtctttcaagcactaattgatac-aaagcgatattcatttaccttaaatgaaaataaagagcatgattct 199  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9366319 ggttgattacaatgctggtctttcaagcactaattgatacaaaagcgatattcatttaccttaaatgaaaataaagagcatgattct 9366405  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 6476695 - 6476755
Alignment:
Q  181 aaataaagagcatgattctatgcatcaagaaagttgaaaatttatggagaccatttgatga 241  Q
    ||||||||||| ||||||  | |||||||||||||| ||||||||||||||||||| ||||    
T  6476695 aaataaagagcgtgattccgtacatcaagaaagttggaaatttatggagaccatttaatga 6476755  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 10554694 - 10554634
Alignment:
Q  181 aaataaagagcatgattctatgcatcaagaaagttgaaaatttatggagaccatttgatga 241  Q
    ||||||||||| ||||||  | |||||||||||||| ||||||||||| ||||||| ||||    
T  10554694 aaataaagagcgtgattccgtacatcaagaaagttggaaatttatggaaaccatttaatga 10554634  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 19080533 - 19080473
Alignment:
Q  181 aaataaagagcatgattctatgcatcaagaaagttgaaaatttatggagaccatttgatga 241  Q
    ||||||||||| ||||||  | |||||||||||||| ||||||||||||||||||| ||||    
T  19080533 aaataaagagcgtgattccgtacatcaagaaagttggaaatttatggagaccatttaatga 19080473  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 46168265 - 46168225
Alignment:
Q  201 tgcatcaagaaagttgaaaatttatggagaccatttgatga 241  Q
    |||| ||||||||||| ||||||||||||||||||| ||||    
T  46168265 tgcagcaagaaagttggaaatttatggagaccatttaatga 46168225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 11349264 - 11349332
Alignment:
Q  14 gcaaaggagcagccaattactcttctaggtgtgaataattggtgattgtatagtagataatttgagacc 82  Q
    |||||||| || ||||||||||| ||  |||||||||||||||| |  |||||||||||||||||||||    
T  11349264 gcaaaggaacatccaattactctactgagtgtgaataattggtggtgttatagtagataatttgagacc 11349332  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 8548956 - 8548914
Alignment:
Q  192 atgattctatgcatcaagaaagttgaaaatttatggagaccat 234  Q
    |||||||  ||||| ||||||||||||||||||||||||||||    
T  8548956 atgattcggtgcataaagaaagttgaaaatttatggagaccat 8548914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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