View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2577_high_12 (Length: 250)
Name: NF2577_high_12
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2264790 - 2264997
Alignment:
| Q |
1 |
tatcaatagaatattattagtgcagagtcaaattgttgtatctttctttgtaataccagataactaaaggaaaatcaaacagtcaaactaattaattaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2264790 |
tatcaatagaatattattagtgcagagtcaaattgttgtatctttctttgtaataccagataactaaaggaaaatcaaacagtcaaactaattaattaaa |
2264889 |
T |
|
| Q |
101 |
ttaacttaaactatgcaaaatacaaaatctgttttcatataaagctttgcttgagacatggaatggaagtgtcaaaccttcaacgagaagcaatacaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2264890 |
ttaacttaaactatgcaaaatacaaaatctcctttcatataaagc-ttgcttgagacatggaatggaagtgtcaaaccttcaacgagaagcaatacaaat |
2264988 |
T |
|
| Q |
201 |
aattcttta |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
2264989 |
aattcttta |
2264997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University