View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2577_high_17 (Length: 236)
Name: NF2577_high_17
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15378428 - 15378209
Alignment:
| Q |
1 |
acgtcacaattgtagaaaaaattgggtttctaaatatcattattcctaaatataaaggtatttttgtatctaattaataaatcgagatttttaagaagac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15378428 |
acgtcacaattgtagaaaaaaatgggtttctaaatatcattattcctaaatataaaggtatttttgtatctaattaataaatcgagatttttaagaagac |
15378329 |
T |
|
| Q |
101 |
taactagaaaactttaaaattttaataatgtactattttcttttgtttacatttttgcaaaaagaaatttaatgcacaaagtttgttactacaaattctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
15378328 |
taactagaaaactttaaaattttaataatgtactattttcttttgtttacatttttgcaaaaagaaatttagtacacaaagtttgttactacaaattctc |
15378229 |
T |
|
| Q |
201 |
taataagcgaaatgatattt |
220 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
15378228 |
taataagtgaaatcatattt |
15378209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University