View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2577_high_18 (Length: 236)

Name: NF2577_high_18
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2577_high_18
NF2577_high_18
[»] scaffold1678 (2 HSPs)
scaffold1678 (120-222)||(927-1029)
scaffold1678 (1-59)||(1090-1148)
[»] chr2 (12 HSPs)
chr2 (120-221)||(32276349-32276450)
chr2 (120-182)||(32241336-32241398)
chr2 (120-189)||(24433687-24433756)
chr2 (120-191)||(22139190-22139261)
chr2 (120-185)||(32302881-32302946)
chr2 (122-185)||(32295208-32295271)
chr2 (3-59)||(32276231-32276288)
chr2 (5-55)||(22139326-22139376)
chr2 (5-59)||(32295096-32295150)
chr2 (3-59)||(32302762-32302819)
chr2 (5-58)||(32241460-32241511)
chr2 (19-59)||(24433820-24433860)
[»] scaffold0390 (4 HSPs)
scaffold0390 (120-191)||(2003-2074)
scaffold0390 (120-191)||(14987-15058)
scaffold0390 (5-55)||(1888-1938)
scaffold0390 (5-55)||(14872-14922)
[»] scaffold0786 (2 HSPs)
scaffold0786 (122-191)||(3473-3542)
scaffold0786 (5-55)||(3356-3406)


Alignment Details
Target: scaffold1678 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 1029 - 927
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcaccaaaagttgcaccaaaggctgcaacagataaa 219  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1029 ggcaagatcattttctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcaccaaaagttgcaccaaaggctgcaacagataaa 930  T
Q  220 gtt 222  Q
    |||    
T  929 gtt 927  T

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Target: scaffold1678; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1148 - 1090
Alignment:
Q  1 attcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaagggg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1148 attcttgcatgctcctacataagactttgtagtatcacattgtttttcattacaagggg 1090  T

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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 32276349 - 32276450
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcaccaaaagttgcaccaaaggctgcaacagataaa 219  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| || |||||    
T  32276349 ggcaagatcatttgttgtcgttgctctcattgtctcagctttttgcttctcatctgtcttcgctgcaccaaaagttgcaccaaatgctgcagcaaataaa 32276448  T
Q  220 gt 221  Q
    ||    
T  32276449 gt 32276450  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 32241398 - 32241336
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggc 182  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  32241398 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtcttggc 32241336  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 24433756 - 24433687
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcacca 189  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  24433756 ggcaatatcatttgctgtcgttgctctcattgtctcagctttttgcttctcatctgtcttagctggacca 24433687  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 22139261 - 22139190
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcaccaaa 191  Q
    |||||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  22139261 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggctgcaccaaa 22139190  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 32302881 - 32302946
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgc 185  Q
    |||||| |||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  32302881 ggcaaggtcattttctgtcgttgctctcattgtctctgctttttgcttctcatctgtcttggctgc 32302946  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 32295208 - 32295271
Alignment:
Q  122 caagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgc 185  Q
    |||| ||||||| | |||||||||||||||| || |||||||||||||||| ||||||||||||    
T  32295208 caaggtcatttgttgtcgttgctctcattgtttctgctttttgcttctcatctgtcttggctgc 32295271  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 32276231 - 32276288
Alignment:
Q  3 tcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaagggg 59  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||    
T  32276231 tcttgcatgctcctatataaagacttggtagtatcacattgtttttcatcacaagggg 32276288  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 22139376 - 22139326
Alignment:
Q  5 ttgcatgctcctacataagactttgtagtatcacattgtttttcattacaa 55  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||| ||||    
T  22139376 ttgcatgctcctatataagtcttggtagtatcacattgtttttcatcacaa 22139326  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 32295096 - 32295150
Alignment:
Q  5 ttgcatgctcctacataagactttgtagtatcacattgtttttcattacaagggg 59  Q
    ||||||||||||| ||||||||| ||| |||| ||||||||||||| ||||||||    
T  32295096 ttgcatgctcctatataagacttggtaatatcccattgtttttcatcacaagggg 32295150  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 32302762 - 32302819
Alignment:
Q  3 tcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaagggg 59  Q
    ||||||||||||||| |||| ||||| |||||||| ||||||||||||| ||||||||    
T  32302762 tcttgcatgctcctatataaagacttggtagtatcccattgtttttcatcacaagggg 32302819  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 32241511 - 32241460
Alignment:
Q  5 ttgcatgctcctacataagactttgtagtatcacattgtttttcattacaaggg 58  Q
    ||||||||||||| |||||  || |||||||||||||||||||||| |||||||    
T  32241511 ttgcatgctcctatataag--ttggtagtatcacattgtttttcatcacaaggg 32241460  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 24433860 - 24433820
Alignment:
Q  19 ataagactttgtagtatcacattgtttttcattacaagggg 59  Q
    ||||| ||| |||||||||||||||||||||| ||||||||    
T  24433860 ataagtcttggtagtatcacattgtttttcatcacaagggg 24433820  T

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Target: scaffold0390 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 2003 - 2074
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcaccaaa 191  Q
    |||||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  2003 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggctgcaccaaa 2074  T

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Target: scaffold0390; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 14987 - 15058
Alignment:
Q  120 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcaccaaa 191  Q
    |||||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  14987 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggctgcaccaaa 15058  T

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Target: scaffold0390; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 1888 - 1938
Alignment:
Q  5 ttgcatgctcctacataagactttgtagtatcacattgtttttcattacaa 55  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||| ||||    
T  1888 ttgcatgctcctatataagtcttggtagtatcacattgtttttcatcacaa 1938  T

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Target: scaffold0390; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 14872 - 14922
Alignment:
Q  5 ttgcatgctcctacataagactttgtagtatcacattgtttttcattacaa 55  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||| ||||    
T  14872 ttgcatgctcctatataagtcttggtagtatgacattgtttttcatcacaa 14922  T

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Target: scaffold0786 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 3473 - 3542
Alignment:
Q  122 caagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtcttggctgcaccaaa 191  Q
    |||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  3473 caagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtcttggctgcaccaaa 3542  T

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Target: scaffold0786; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 3356 - 3406
Alignment:
Q  5 ttgcatgctcctacataagactttgtagtatcacattgtttttcattacaa 55  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||| ||||    
T  3356 ttgcatgctcctatataagtcttggtagtatcacattgtttttcatcacaa 3406  T

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