View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_high_2 (Length: 418)
Name: NF2577_high_2
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 131 - 404
Target Start/End: Original strand, 32482156 - 32482429
Alignment:
| Q |
131 |
aaaaaacataagttaggagtattacacaaaaacaaacgttgaaggaagctatagctgctagctgggaagtgatattgaaagcgtgattaacgctgcttgc |
230 |
Q |
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| T |
32482156 |
aaaaaacataagttaggagtattacacaaaaacaaacgttgaaggaagctatagctgctagctgggaagtgatattgaaagcgtgattaacgctgcttgc |
32482255 |
T |
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| Q |
231 |
tgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaattactatactcttttcccaaccataac |
330 |
Q |
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| T |
32482256 |
tgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaattactatactcttttcccaaccataac |
32482355 |
T |
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| Q |
331 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaac |
404 |
Q |
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| T |
32482356 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaac |
32482429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 32482034 - 32482111
Alignment:
| Q |
10 |
gcagagagaaagagaggggcatggcggcgtttgcagtgcagagatagctgtaaaaagactgtggtactgttccttcct |
87 |
Q |
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| T |
32482034 |
gcagagagaaagagaggggcatggcggcgtttgcagtgcagagatagctgtaaaaagactgtggtactgttccttcct |
32482111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 11308502 - 11308535
Alignment:
| Q |
369 |
ttgttttgtgtaattttctggagacgcacacaaa |
402 |
Q |
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| T |
11308502 |
ttgttttgtggaattttctggagacgcacacaaa |
11308535 |
T |
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