View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_high_20 (Length: 232)
Name: NF2577_high_20
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 44042862 - 44042915
Alignment:
| Q |
11 |
gcacagacacaatctcaaatcatttttcttacggaacctctcactcactcactc |
64 |
Q |
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| T |
44042862 |
gcacaaacacaatctcaaatcatttttcttacggaacctctcactcactcactc |
44042915 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 44042954 - 44043002
Alignment:
| Q |
73 |
ttcatttctctatcttttcttcattcctattaatattaataactaccac |
121 |
Q |
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| T |
44042954 |
ttcatttctctatcttttcttcattcctattaatattaataactaccac |
44043002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 44043057 - 44043104
Alignment:
| Q |
168 |
agatttcgtttttcttcaatcaggtaatcaatcaaccatggtgctctt |
215 |
Q |
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| T |
44043057 |
agatttcgtttttcttcaatcaggtaatcaatcaaccatggtgctctt |
44043104 |
T |
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