View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_high_3 (Length: 387)
Name: NF2577_high_3
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 174 - 379
Target Start/End: Original strand, 34939434 - 34939640
Alignment:
| Q |
174 |
agttgttttgttttctttcactgttgctagtgtttgtctctgcctaaagagcctaaagtttagtgtatttttccttagcaaacnnnnnnncttggctctg |
273 |
Q |
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| T |
34939434 |
agttgttttgttttctttcactgttgctagtgtttgtctctgcctaaagagcctaaagtttagtgtatttttccttagcaaacaaaaaaacttggctctg |
34939533 |
T |
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| Q |
274 |
aaatttgtaacaaacattttctatatactaagcaagcaccaagttctatgca-nnnnnnnggcctctccccttccattgactttcttcatttccaaattc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34939534 |
aaatttgtaacaaacattttctatatactaagcaagcaccaagttctatgcatattttttggcctctccccttccattgactttcttcatttccaaattc |
34939633 |
T |
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| Q |
373 |
ctatgct |
379 |
Q |
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||||||| |
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| T |
34939634 |
ctatgct |
34939640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 34939275 - 34939401
Alignment:
| Q |
19 |
agatgtaactacaataacattatcttctaaaaacttgacgagtatttccatatttcgaaatgaaaaaccacttctcattatgtcttccttctcttattac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34939275 |
agatgtaactacaataacattatcttctaaaaacttgacgagtatttccatatttcgaaatgaaaaaccacttctcattatgtcttccttctcttattac |
34939374 |
T |
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| Q |
119 |
acttttattcactctataccaaaacca |
145 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34939375 |
acttttattcactctataccaaaacca |
34939401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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