View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_high_6 (Length: 328)
Name: NF2577_high_6
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 14021648 - 14021338
Alignment:
| Q |
18 |
agagtacgagggaagagcttgaagatgtttcgaatccaagtggtggaggaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacagaa |
117 |
Q |
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| T |
14021648 |
agagtacgagggaagagcttgaagatgtttcgaatccaagtggtggaggaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacagaa |
14021549 |
T |
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| Q |
118 |
ggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattctgtaatgaaagtggtgttaagcgt |
217 |
Q |
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| T |
14021548 |
ggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattctgtaatgaaagtggtgttaagcgt |
14021449 |
T |
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| Q |
218 |
catgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagccctagatatgaaaacaaaaacccaaataacaaaatttgaatattttct |
317 |
Q |
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| T |
14021448 |
catgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagccctagatatgaaaacaaaaacccaaataacaaaatttgaatattttct |
14021349 |
T |
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| Q |
318 |
ttcctagggtt |
328 |
Q |
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| T |
14021348 |
ttcctagggtt |
14021338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 27508683 - 27508737
Alignment:
| Q |
219 |
atgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagcccta |
273 |
Q |
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| T |
27508683 |
atgttcttaaagtttggatgcacaataacaagaacactcttggtaagaaacccta |
27508737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 273
Target Start/End: Complemental strand, 46300827 - 46300649
Alignment:
| Q |
95 |
acaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattct |
194 |
Q |
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| T |
46300827 |
acaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggtgcaattgaacaattct |
46300728 |
T |
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| Q |
195 |
gtaatgaaagtggtgttaagcgtcatgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagcccta |
273 |
Q |
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| T |
46300727 |
gtgctgagaattttatcaagagacatgtgcttaaggtttggatgcacaataacaagcacactcttggtaagaaacccta |
46300649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 2494415 - 2494258
Alignment:
| Q |
92 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaat |
191 |
Q |
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| T |
2494415 |
aggacaaagtttacacaagatcagaaggataagatgctgaaatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagt |
2494316 |
T |
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| Q |
192 |
tctgtaatgaaagtggtgttaagcgtcatgttcttaaggtttggatgcataacaacaa |
249 |
Q |
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| T |
2494315 |
tttgtaatgaaattggtgttgatcgtagtgttcttaaggtttggatgcataacaacaa |
2494258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 56378749 - 56378802
Alignment:
| Q |
92 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
145 |
Q |
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| T |
56378749 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
56378802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 3683678 - 3683646
Alignment:
| Q |
95 |
acaaaattcacgcaggaacagaaggataagatg |
127 |
Q |
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| T |
3683678 |
acaaaattcacgcaggaacagaaggaaaagatg |
3683646 |
T |
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