View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_high_7 (Length: 294)
Name: NF2577_high_7
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 32502396 - 32502133
Alignment:
| Q |
20 |
caccattcttgggtgactttgattgagaataccattcaattggctcttcaaattcgagattgtaacattatcattaatccaaaacaaatttagtttgtct |
119 |
Q |
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| T |
32502396 |
caccattcttgggtcactttgattgagaataccatttaattatctcttcaaattcgagattgtaacattatcattaatccaaaacaaatttagtttgtct |
32502297 |
T |
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| Q |
120 |
ttgttacagtaaactgcagccagattaaaattcattttcaactaggttataattcattttgcaactgtgttaactaggacaacagtactcaattagttta |
219 |
Q |
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| T |
32502296 |
ttgttacagtaaactgcagccggattaaaattcattttcaactaggttataattcattttgcaactgtgttaactaggacaacagtactcaattagttta |
32502197 |
T |
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| Q |
220 |
gatgcaacattaccatgcccagaacaacagtactacttgttttttgatttctcctacttttcat |
283 |
Q |
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| T |
32502196 |
gatgcaacattaccatgcccagaacattagtactacttgttttttgatttctcctacttttcat |
32502133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 11648282 - 11648397
Alignment:
| Q |
45 |
agaataccattcaattggctcttcaaattcgagattgtaacattatcattaatccaa---aacaaatttagtttgtctttgttacagtaaactgcagcca |
141 |
Q |
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|||| |||||||| |||||||||||||| | | ||||||||||||||| || | | ||||||||||||||| | ||||| |||||||| ||| | |
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| T |
11648282 |
agaagaccattcagttggctcttcaaatcataaagtgtaacattatcattgattctaattaacaaatttagtttgccactgttatagtaaactcgagcta |
11648381 |
T |
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| Q |
142 |
gattaaaattcatttt |
157 |
Q |
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| T |
11648382 |
ggttaaaattcatttt |
11648397 |
T |
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