View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_high_8 (Length: 279)
Name: NF2577_high_8
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 10190042 - 10190285
Alignment:
| Q |
18 |
gtttaaaatttgacccaatttnnnnnnnncttaagacatccaaacatgtcctcaagatgattactgcaatgtttgcaaagcgtgtaaaagaccatacagg |
117 |
Q |
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| T |
10190042 |
gtttaaaatttgacccaatttaaaaaaaacttaagacatccaaacatgtcctcaagatgattactgcaatgtttgcaaagcgtgtaaaagaccatacagg |
10190141 |
T |
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| Q |
118 |
aagaaaacgaacaaaagattcaataatgtaagaagtctaaatgaagtgaagtaaacaatacatatcatggattatggatttgtccaatacaaaacagtta |
217 |
Q |
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| T |
10190142 |
aagaaaacgaacaaaagattcaataatgtaagaagtctaaatgaagtgaagtaaacaatacatatcatggattatggatttgtccaatacaaaacagtta |
10190241 |
T |
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| Q |
218 |
acacatgatacttaattacacttggaataaagtaactcttaaca |
261 |
Q |
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| T |
10190242 |
acacatgatacttaattacacttggaataaagtaactcttaaca |
10190285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 19463606 - 19463473
Alignment:
| Q |
47 |
cttaagacatccaaacatgtcctcaagatgattactgcaatgtttgcaaagcgtgtaa-aagaccatacaggaagaaaacgaacaaaagattcaataatg |
145 |
Q |
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| T |
19463606 |
cttaagacatccaaacatgtcctcaagatgattactgcaatgtctgcaaagcgtgtaacaagaccattcaggaagaaaacgaacaaaaaaatcaataatg |
19463507 |
T |
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| Q |
146 |
taagaagtctaaatgaagtgaagtaaacaataca |
179 |
Q |
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| T |
19463506 |
taagaagtctaaatgaagtgaagtgaataataca |
19463473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 19463429 - 19463338
Alignment:
| Q |
169 |
taaacaatacatatcatggattatggatttgtccaatacaaaacagttaacacatgatacttaattacacttggaataaagtaactcttaaca |
261 |
Q |
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| T |
19463429 |
taaacaatacatatcatggattatggata-gtccaatacaaaacagttagctagtgataattaattacacttggaataaaataactctgaaca |
19463338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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