View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2577_low_13 (Length: 253)
Name: NF2577_low_13
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_low_13 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 53 - 253
Target Start/End: Complemental strand, 28536849 - 28536649
Alignment:
| Q |
53 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatataggaatttggtttgaatattcatatggaatttcaaag |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536849 |
atgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaatatacaggaatttggtttgaatattcatatggaatttcaaag |
28536750 |
T |
|
| Q |
153 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatcgagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28536749 |
cggccaaccttatatctttcatggtaattactaattatacatagtagagtggatccagtttcgaaacacgtaatgtttcctggttaattcagtggaaatt |
28536650 |
T |
|
| Q |
253 |
t |
253 |
Q |
| |
|
| |
|
|
| T |
28536649 |
t |
28536649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 28536941 - 28536833
Alignment:
| Q |
11 |
gaacctgtgataatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattctgttttcagcttttattttttcatcaatgacaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
28536941 |
gaacctgtgataatttcatcaataaccctttggtttaactccatgattaatatacaggagtcattctgttttcaccttttattttttcatcaatgattaa |
28536842 |
T |
|
| Q |
111 |
tatatagga |
119 |
Q |
| |
|
|||| |||| |
|
|
| T |
28536841 |
tatacagga |
28536833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University