View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_low_2 (Length: 434)
Name: NF2577_low_2
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 21 - 387
Target Start/End: Original strand, 9174317 - 9174684
Alignment:
| Q |
21 |
attttcacacacaca-gcacaaacatcaaaatctctcccatggatcactacaaagttctagggttagaaaaaacagcaaccaaagaagaaatcaaagctg |
119 |
Q |
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| T |
9174317 |
attttcacacacacaagcacaaacatcaaaatctctcccatggatcactacaaagttctagggttagaaaaaacagcaaccaaagaagaaatcaaagctg |
9174416 |
T |
|
| Q |
120 |
cattcaagaaactcgcgcttcaatgtcatccagataagcattctcagtcaccgaaatacgttcaacacaacgccaaacttcgattcaaacaggtttctga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9174417 |
cattcaagaaactcgcgcttcaatgtcatccagataagcattctcagtcaccgaaatacgttcaacacaacgccaaacttcgattcaaacaggtttctga |
9174516 |
T |
|
| Q |
220 |
agcgtatgaagttcttatggatgatcgcaaacgtgccaaatataattaccagtcgcatgctggtggtggaggcctgtgtcggtaccagtgcactgagtat |
319 |
Q |
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| T |
9174517 |
agcatatgaagttcttatggatgatcgcaaacgtgccaaatataattaccagtcgcatgctggtggtggaggcctgtgtcggtaccagtgcactgagtat |
9174616 |
T |
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| Q |
320 |
tattcaaagtatggatatggtaaaagtgggagtggttatggagataaaactaggtctagtgggttgaa |
387 |
Q |
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| T |
9174617 |
tattcaaagtatggatatggtaaaagtgggagtggttatggagataaaactaggtctagtgggttgaa |
9174684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 21 - 387
Target Start/End: Complemental strand, 9154387 - 9154021
Alignment:
| Q |
21 |
attttcacacacacagcacaaacatcaaaatctctcccatggatcactacaaagttctagggttagaaaaaacagcaaccaaagaagaaatcaaagctgc |
120 |
Q |
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| T |
9154387 |
attttcacacacacagcacaaacatcaaaatctctcccatggatcactacaaagttctagggttagaaaaaacagcaaccaaagaagaaatcaaagctgc |
9154288 |
T |
|
| Q |
121 |
attcaagaaactcgcgcttcaatgtcatccagataagcattctcagtcaccgaaatacgttcaacacaacgccaaacttcgattcaaacaggtttctgaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9154287 |
attcaagaaactcgcgcttcaatgtcatccagataagcattctcagtcactgaaatacgttcaacacaacgccaaacttcgattcaaacaggtttctgaa |
9154188 |
T |
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| Q |
221 |
gcgtatgaagttcttatggatgatcgcaaacgtgccaaatataattaccagtcgcatgctggtggtggaggcctgtgtcggtaccagtgcactgagtatt |
320 |
Q |
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| T |
9154187 |
gcatatgaagttcttatggatgatcgcaaacgcgccaaatataattaccagtcgcatgctggtggtggaggcctgtgtcggtaccagtgcactgagtatt |
9154088 |
T |
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| Q |
321 |
attcaaagtatggatatggtaaaagtgggagtggttatggagataaaactaggtctagtgggttgaa |
387 |
Q |
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| T |
9154087 |
attcaaagtatggatatggtaaaagtgggagtggttatggagataaaactaggtctagtgggttgaa |
9154021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 9110103 - 9109897
Alignment:
| Q |
40 |
aaacatcaaaatctctcccatggatcactacaaagttctagggttagaaaaaacagcaaccaaagaagaaatcaaagctgcattcaagaaactcgcgctt |
139 |
Q |
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||||| |||||||||| |||||||| ||||| |||||||||||| | |||||||| | ||||||||||||||| |||||||||||||||||| || |
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| T |
9110103 |
aaacaccaaaatctctatgatggatcattacaaggttctagggttaaacaaaacagcgtcaaaagaagaaatcaaaatcgcattcaagaaactcgcgttt |
9110004 |
T |
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| Q |
140 |
caatgtcatccagataagcattctcagtcaccgaaatacgttcaacacaacgccaaacttcgattcaaacaggtttctgaagcgtatgaagttcttatgg |
239 |
Q |
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|||| ||||||||||||||||||||| ||| | |||| |||| | | || || | | ||||||| || |||||||||||||||||||| ||||| |||| |
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| T |
9110003 |
caatttcatccagataagcattctcaatcatctaaatccgttagagaaaatgcaacaattcgatttaagcaggtttctgaagcgtatgaggttctcatgg |
9109904 |
T |
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| Q |
240 |
atgatcg |
246 |
Q |
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||||||| |
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| T |
9109903 |
atgatcg |
9109897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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