View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2577_low_23 (Length: 229)

Name: NF2577_low_23
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2577_low_23
NF2577_low_23
[»] chr8 (1 HSPs)
chr8 (130-229)||(27540794-27540893)
[»] chr2 (2 HSPs)
chr2 (145-229)||(923727-923811)
chr2 (16-54)||(22996457-22996495)
[»] chr3 (1 HSPs)
chr3 (138-229)||(46833076-46833170)
[»] chr7 (1 HSPs)
chr7 (162-229)||(45032173-45032240)
[»] chr5 (1 HSPs)
chr5 (181-229)||(4357249-4357297)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 27540794 - 27540893
Alignment:
Q  130 ctactgaaaaataaaatctcaacgcggaaaaatcaattataaaggttattattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcattt 229  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| | |  |||||||||||    
T  27540794 ctactgaaaaataaaatctcaatgcagaaaaatcaattatgaaggttattattagaacacatgtccatgtgtttgaaacttagattatctgcattcattt 27540893  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 923811 - 923727
Alignment:
Q  145 atctcaacgcggaaaaatcaattataaaggttattattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcattt 229  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| || | |||||||||||    
T  923811 atctcaacgcagaaaaatcaattataaaagttattattagaacacatgtccatgtgtttgaaacttagatctgctgcattcattt 923727  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 22996495 - 22996457
Alignment:
Q  16 tgtaagttattaataatgaataaatccaaataacttatt 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22996495 tgtaagttattaataatgaataaatccaaataacttatt 22996457  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 46833076 - 46833170
Alignment:
Q  138 aaataaaatctcaacgcggaaaaatcaattataaaggtt---attattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcattt 229  Q
    ||||||||||||||| |||||||||||||||||||||||   |||||||||| |  ||||||||| | |||||||||| |||  |||||||||||    
T  46833076 aaataaaatctcaacacggaaaaatcaattataaaggttataattattagaaaatatgtccatgtatttgaaacttagatcaactgcattcattt 46833170  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 45032240 - 45032173
Alignment:
Q  162 tcaattataaaggttattattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcattt 229  Q
    ||||||| |||||||| |||||| |||| ||||||||||| |||||||||| | |||||||| |||||    
T  45032240 tcaattacaaaggttagtattagcacacatgtccatgtgtttgaaacttagataagttgcatacattt 45032173  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 4357297 - 4357249
Alignment:
Q  181 ttagaacacgtgtccatgtgtctgaaacttagttcagttgcattcattt 229  Q
    ||||||||| ||||||||||| | |||||||| |||| |||||||||||    
T  4357297 ttagaacacatgtccatgtgttttaaacttagatcagctgcattcattt 4357249  T

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