View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_low_3 (Length: 419)
Name: NF2577_low_3
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 51216135 - 51216517
Alignment:
| Q |
20 |
aagacaaagacaaagacgaagacaacaactaccaaagtgagagagaggaaagtctacagtttgcctggtcagaaacatgatcctcctgaagaggttctga |
119 |
Q |
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| T |
51216135 |
aagacaaagacgaagacgaagacaacaactaccaaagtgagagagaggaaagtctacagtttgcctggtcagaaacatgatcctcctgaagaggttctga |
51216234 |
T |
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| Q |
120 |
atttctctctgtttattatttctcgaatttacaattcataggaaatcaaattgtactaatacgagatggttgttgacagaaagaacccctgaggatattc |
219 |
Q |
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| T |
51216235 |
atttctctctgtttattatttctcgaatttacaattcataggaaatcaaattgtactaatacgagatggttgttgacagaaagaacccctgaggatattc |
51216334 |
T |
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| Q |
220 |
tatgagtcattatcaaaacagataccaacaagtgaaatggctgaattttggtgagtttccttccaatcgaaactggaagttttgaacaattccttgtgaa |
319 |
Q |
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| T |
51216335 |
tatgagtcattgtcaaaacagataccaacaagtgaaatggctgaattttggtgagtttccttccaatcgaaactggaagttttgaacaattccttgtgaa |
51216434 |
T |
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| Q |
320 |
ttgtgcatgatagtgttaaatcattcactatgtccaataacttgatgttttatattttgagtttttacaagccatgttgctca |
402 |
Q |
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| T |
51216435 |
ttgtgcataatagtgttaaatcattcactatgtccaataacttgatgttttatattttgagtttttacaagccatgttgctca |
51216517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 51216122 - 51216151
Alignment:
| Q |
13 |
aatatcgaagacaaagacaaagacgaagac |
42 |
Q |
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| T |
51216122 |
aatatcgaagacaaagacaaagacgaagac |
51216151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 57768 - 57852
Alignment:
| Q |
192 |
ttgacagaaagaacccctgaggatattctatgagtcattatcaaaacagataccaacaagtgaaatggctgaattttggtgagtt |
276 |
Q |
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| T |
57768 |
ttgacagaaagaacctctaaggattttttatgagtcattatcaaaacaaataccaacaagtgaaatggcagaattttggtgagtt |
57852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 57583 - 57659
Alignment:
| Q |
38 |
aagacaacaactaccaaagtgagagagaggaaagtctacagtttgcctggtcagaaacatgatcctcctgaagaggt |
114 |
Q |
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| T |
57583 |
aagacaactactacaaaagtaagagagaagaaagtctatagtcttcctgggcagaaacatgatcccccagaagaggt |
57659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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