View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2577_low_7 (Length: 331)
Name: NF2577_low_7
Description: NF2577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2577_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 8515068 - 8515367
Alignment:
| Q |
16 |
gctatgccgatcctcacattgttgtcactgatccattcatgtggaaatgtgaagacggggaaaattttcgaccaacacgaccatttagtttagacactag |
115 |
Q |
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| T |
8515068 |
gctatgccgatcctcacattgttgtcactgatccattcatgtggaaatgtgaagatggggaaaattttcgaccaacacgaccatttagtttagacactag |
8515167 |
T |
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| Q |
116 |
cacaaaattgaagatctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacatttt |
215 |
Q |
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| T |
8515168 |
cacaaaattgaagctctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacatttt |
8515267 |
T |
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| Q |
216 |
cctgaacattgtgattcatcttgcgacagtgctagctacttatgtagacatttaccagggtgttctttttctctaacaagtagttcttgttgttcttatt |
315 |
Q |
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| T |
8515268 |
cctgaacattgtgattcatcttgtgaaagtgctagctacttatgtagacatttaccaggatgttctttttctctaacaagtagttcttgttgttcttatt |
8515367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 314
Target Start/End: Original strand, 55371067 - 55371357
Alignment:
| Q |
24 |
gatcctcacattgttgtcactgatccattcatgtggaaatgtgaagacggggaaaattttcgaccaacacgaccatttagtttagacactagcacaaaat |
123 |
Q |
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| T |
55371067 |
gatccacacattgtagtcactgatccattcatgtggaactgtgaagacggtgtcaattatcgaccaacaagaccatttagtttagacacaagcacacgtt |
55371166 |
T |
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| Q |
124 |
tgaagatctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacattttcctgaaca |
223 |
Q |
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| T |
55371167 |
tcaagctttcgtctcaaaatcagtatattttcttcaattgtagtgaagaaaaagttattgtaaaaccaaagcctgtgttttgtgaacaatttcctgaaca |
55371266 |
T |
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| Q |
224 |
ttgtgattcatcttgcgacagtgctagctacttatgtagacatttaccagggtgttctttttctctaacaagtagttcttgttgttcttat |
314 |
Q |
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| T |
55371267 |
ctgtgattcatcttgtgatagtgctagttatctttgtagacatttgccagagtgttcttttgcgatgagtggtagttcttgttgttcttat |
55371357 |
T |
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