View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2578_high_2 (Length: 438)
Name: NF2578_high_2
Description: NF2578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2578_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 424
Target Start/End: Original strand, 23017087 - 23017503
Alignment:
| Q |
6 |
cagagacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcacacatccact |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017087 |
cagacacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcacacatccact |
23017186 |
T |
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| Q |
106 |
gcattacaaaacaaacttagaaactacggtttttacattatcaactacatcatagacnnnnnnnnnnnnnnnnnaaaactcagtatccgactgaagacaa |
205 |
Q |
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| T |
23017187 |
gcattacaaaacaaacttagaaactacggtttttacattatcaactacatcatagactattttttttttttt--aaaactcagtatccgactgaagacaa |
23017284 |
T |
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| Q |
206 |
ccgtccactagcaggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaagtaactaact |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017285 |
ccgtccactagcaggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaagtaactaact |
23017384 |
T |
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| Q |
306 |
tgacggaagcataacaaaataaaagtggagggggagtaacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcacttgtctgtca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017385 |
tgacggaagcataacaaaataaaagtggagggggagtaacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcacttgtctgtca |
23017484 |
T |
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| Q |
406 |
gcgactttgaccttcaaat |
424 |
Q |
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| T |
23017485 |
gcgactttgaccttcaaat |
23017503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 54914463 - 54914348
Alignment:
| Q |
6 |
cagagacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcacacatccact |
105 |
Q |
| |
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|||| |||||||||| |||||||| ||| |||||||||| |||||||||||||||||| || | ||||| |||||||| |||||||| ||||||||||| |
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| T |
54914463 |
cagacacaatcactgcctttcctttattaatattggacagaaactcatccaaaccttgcttctccagcataaccgtctctgctgatgtgacacatccact |
54914364 |
T |
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| Q |
106 |
gcattacaaaacaaac |
121 |
Q |
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| T |
54914363 |
gtattaccaaacaaac |
54914348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 54913037 - 54912970
Alignment:
| Q |
342 |
taacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcacttgtctgtcagcga |
409 |
Q |
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| T |
54913037 |
taacctgcatgccaaacaatccttaagcgaaattttaacaggttctgacttcacttgtctgtcagcga |
54912970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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