View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2578_high_9 (Length: 238)

Name: NF2578_high_9
Description: NF2578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2578_high_9
NF2578_high_9
[»] chr1 (13 HSPs)
chr1 (1-106)||(33861425-33861530)
chr1 (1-106)||(33919392-33919497)
chr1 (109-216)||(29255357-29255464)
chr1 (115-219)||(29254657-29254761)
chr1 (132-219)||(9981418-9981505)
chr1 (146-219)||(13263774-13263847)
chr1 (109-219)||(6631316-6631426)
chr1 (109-219)||(17238417-17238527)
chr1 (109-219)||(6632026-6632136)
chr1 (109-219)||(17237705-17237815)
chr1 (177-219)||(13264430-13264472)
chr1 (106-157)||(19990273-19990324)
chr1 (106-157)||(47966992-47967043)
[»] chr2 (9 HSPs)
chr2 (107-219)||(30617392-30617504)
chr2 (109-219)||(41320009-41320119)
chr2 (113-216)||(13545311-13545414)
chr2 (109-219)||(13544598-13544708)
chr2 (109-217)||(41320723-41320831)
chr2 (117-184)||(11169280-11169347)
chr2 (103-183)||(8143321-8143402)
chr2 (109-186)||(15555016-15555093)
chr2 (109-157)||(24983125-24983173)
[»] chr4 (3 HSPs)
chr4 (104-219)||(32527489-32527604)
chr4 (153-219)||(32526833-32526899)
chr4 (105-151)||(27110485-27110531)
[»] chr3 (4 HSPs)
chr3 (109-219)||(52362640-52362750)
chr3 (109-213)||(16674246-16674350)
chr3 (134-219)||(16673555-16673640)
chr3 (105-169)||(48207595-48207659)
[»] chr5 (2 HSPs)
chr5 (105-219)||(41516456-41516570)
chr5 (109-157)||(8469813-8469861)
[»] chr6 (2 HSPs)
chr6 (126-218)||(14125165-14125257)
chr6 (105-151)||(2479292-2479338)
[»] chr7 (1 HSPs)
chr7 (103-135)||(29525101-29525133)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33861530 - 33861425
Alignment:
Q  1 tagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaattaatattattattcgaaccgcttactacatgtatattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33861530 tagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaattaatattagtattcgaaccgcttactacatgtatattc 33861431  T
Q  101 taaaaa 106  Q
    ||||||    
T  33861430 taaaaa 33861425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33919392 - 33919497
Alignment:
Q  1 tagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaattaatattattattcgaaccgcttactacatgtatattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33919392 tagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaattaatattagtattcgaaccgcttactacatgtatattc 33919491  T
Q  101 taaaaa 106  Q
    ||||||    
T  33919492 taaaaa 33919497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 29255464 - 29255357
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    ||||||||||||| |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29255464 ggagggatatattgactctaagagtaagtttctagacttacaccaaatcacaacctttcattgtattttaatctaatggcttgaatgatagttttaaatg 29255365  T
Q  209 ttaatcat 216  Q
    ||||||||    
T  29255364 ttaatcat 29255357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 29254657 - 29254761
Alignment:
Q  115 atatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatc 214  Q
    |||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  29254657 atattttaactccaagagtaagtttgtagacttactccaaatcataacctttcattatattttaatctaacggcttgaatgatagtcttaattgttaatc 29254756  T
Q  215 atgtg 219  Q
    |||||    
T  29254757 atgtg 29254761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 9981505 - 9981418
Alignment:
Q  132 gtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtg 219  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  9981505 gtaagtttgtagacttactccaaatcacaacctttcattgtattttaatctaacgacttgaatgataattttaaatgttaaacatgtg 9981418  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 13263774 - 13263847
Alignment:
Q  146 ttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtg 219  Q
    |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  13263774 ttactccaaatcacaacctttcattgtattttaatctaacggttcgaatgatagttttaaatgttaatcatgtg 13263847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 6631316 - 6631426
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||||||||| || |||||||| |||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  6631316 ggagggatattttgactccaagggtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 6631415  T
Q  209 ttaatcatgtg 219  Q
    |||||||||||    
T  6631416 ttaatcatgtg 6631426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 17238527 - 17238417
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17238527 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17238428  T
Q  209 ttaatcatgtg 219  Q
    |||||||||||    
T  17238427 ttaatcatgtg 17238417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 6632136 - 6632026
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||||||||| |  ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  6632136 ggagggatatttagactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 6632037  T
Q  209 ttaatcatgtg 219  Q
    |||||||||||    
T  6632036 ttaatcatgtg 6632026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 17237705 - 17237815
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||||||||| || ||| ||||||||||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17237705 ggagggatattttgactgcaagagtaagtttatagacttactccaaatatccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17237804  T
Q  209 ttaatcatgtg 219  Q
    |||||||||||    
T  17237805 ttaatcatgtg 17237815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 13264472 - 13264430
Alignment:
Q  177 taatctaacggcttgaatgatagttttaaatgttaatcatgtg 219  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  13264472 taatctaacggcttgaatgatagtcttaattgttaatcatgtg 13264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 19990273 - 19990324
Alignment:
Q  106 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 157  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||| |||||    
T  19990273 aggggagggatatattgactccaagagtaagtctaaagacttactccaaatc 19990324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 47966992 - 47967043
Alignment:
Q  106 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 157  Q
    |||||||||||||||| ||||||||||||||| |||| | |||||| |||||    
T  47966992 aggggagggatatattgactccaagagtaagtgtttaaagttactccaaatc 47967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 30617392 - 30617504
Alignment:
Q  107 ggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaa 206  Q
    ||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30617392 ggggagggatatattgactcaaaaagtaagtttctagacttactctaaatcacaacctttcattgtattttaatctaacagcttgaatgatagttttaaa 30617491  T
Q  207 tgttaatcatgtg 219  Q
    | |||| ||||||    
T  30617492 tattaaccatgtg 30617504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 41320009 - 41320119
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  41320009 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 41320108  T
Q  209 ttaatcatgtg 219  Q
    |||||||||||    
T  41320109 ttaatcatgtg 41320119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 13545414 - 13545311
Alignment:
Q  113 ggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaa 212  Q
    |||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||   ||||||| ||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgggttttaattgttaa 13545315  T
Q  213 tcat 216  Q
    ||||    
T  13545314 tcat 13545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 13544598 - 13544708
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||||||||| || ||| ||||||||||||| |||||||| || ||||| | |||||||||  |||||||||||||  | || ||||  |||||||| ||    
T  13544598 ggagggatattttgacttcaagagtaagtttatagacttattccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagttttaattg 13544697  T
Q  209 ttaatcatgtg 219  Q
    |||||||||||    
T  13544698 ttaatcatgtg 13544708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 41320831 - 41320723
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||| ||||| || ||||||| ||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  | |||||| ||    
T  41320831 ggagagatattttgactccaatagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgaattttaattg 41320732  T
Q  209 ttaatcatg 217  Q
    |||||||||    
T  41320731 ttaatcatg 41320723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 11169280 - 11169347
Alignment:
Q  117 atattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaa 184  Q
    ||||| ||||||||| ||||||| |||| |||||||||||| | |||||||||   ||||||||||||    
T  11169280 atattgactccaagaataagtttatagatttactctaaatctccacctttcatctcattttaatctaa 11169347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 8143402 - 8143321
Alignment:
Q  103 aaaaggggagggatatattaactccaa-gagtaagtttttagacttactctaaatcacaacctttcattgtattttaatcta 183  Q
    |||||||||||||||| || ||||||| |||||| | ||| || |||||| |||||||| || |||||| | ||||||||||    
T  8143402 aaaaggggagggatattttgactccaaggagtaactcttttgagttactccaaatcacatcccttcattatgttttaatcta 8143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 15555093 - 15555016
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacg 186  Q
    |||||||||| |||||||||||||||| | |||  | |||||| |||||||| || | |||| |||||||||| ||||    
T  15555093 ggagggatattttaactccaagagtaactcttttaagttactccaaatcacatccctccattttattttaatccaacg 15555016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 24983125 - 24983173
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatc 157  Q
    ||||||||||||  ||||||||||||||| |||| | ||||||||||||    
T  24983125 ggagggatatatcgactccaagagtaagtctttaaagttactctaaatc 24983173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 32527604 - 32527489
Alignment:
Q  104 aaaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttt 203  Q
    ||||||||| ||||| || |||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||    
T  32527604 aaaggggagagatattttgactctaagagtaagtttgtagacttactccaaatcacaacctttcattatattttaatctaacagcttgaatgatagtctt 32527505  T
Q  204 aaatgttaatcatgtg 219  Q
    || |||||||||||||    
T  32527504 aattgttaatcatgtg 32527489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 32526833 - 32526899
Alignment:
Q  153 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32526833 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtg 32526899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 27110531 - 27110485
Alignment:
Q  105 aaggggagggatatattaactccaagagtaagtttttagacttactc 151  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  27110531 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 27110485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 52362640 - 52362750
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||||||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  52362640 ggagggatattttgactccaagagtaagtttatagacctactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 52362739  T
Q  209 ttaatcatgtg 219  Q
    |||||||||||    
T  52362740 ttaatcatgtg 52362750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 16674350 - 16674246
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 208  Q
    |||| ||||| || |||| |||||||||||| ||||||||||| |||||   |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  16674350 ggagagatattttgactcaaagagtaagtttatagacttactccaaatctacacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 16674251  T
Q  209 ttaat 213  Q
    |||||    
T  16674250 ttaat 16674246  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 16673555 - 16673640
Alignment:
Q  134 aagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtg 219  Q
    |||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  | |||||| |||||||||||||    
T  16673555 aagtttatagacttactcaaaatatccacctttcatcttattttaatctaatggtttaaatgtgaattttaattgttaatcatgtg 16673640  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 48207595 - 48207659
Alignment:
Q  105 aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcat 169  Q
    ||||||||||||||||| ||||||||| ||||| |  ||||||| || |||||  ||||||||||    
T  48207595 aaggggagggatatattgactccaagaataagtctaaagacttattccaaatctaaacctttcat 48207659  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 41516456 - 41516570
Alignment:
Q  105 aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttta 204  Q
    |||||||||||||| || |||| |||||||  ||| ||||||||||| ||||| | |||||||||  |||||||||||||  | || ||||  |||||||    
T  41516456 aaggggagggatattttgactctaagagtatatttatagacttactccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagtttta 41516555  T
Q  205 aatgttaatcatgtg 219  Q
    | |||||||||||||    
T  41516556 attgttaatcatgtg 41516570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 8469861 - 8469813
Alignment:
Q  109 ggagggatatattaactccaagagtaagtttttagacttactctaaatc 157  Q
    |||||||||| || ||||||||||||| ||| |||||||||||||||||    
T  8469861 ggagggatattttgactccaagagtaaatttatagacttactctaaatc 8469813  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 14125165 - 14125257
Alignment:
Q  126 ccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgt 218  Q
    |||| ||||||||| ||||||||||| ||||| | |||||||||| ||||||||| |||||||||||    ||||||||| ||||||| ||||    
T  14125165 ccaaaagtaagtttatagacttactccaaatcgctacctttcattttattttaatttaacggcttgatcattagttttaattgttaataatgt 14125257  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 2479292 - 2479338
Alignment:
Q  105 aaggggagggatatattaactccaagagtaagtttttagacttactc 151  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  2479292 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 2479338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 29525101 - 29525133
Alignment:
Q  103 aaaaggggagggatatattaactccaagagtaa 135  Q
    ||||||||||||||||||| |||||||||||||    
T  29525101 aaaaggggagggatatattgactccaagagtaa 29525133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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