View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2578_low_1 (Length: 438)
Name: NF2578_low_1
Description: NF2578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2578_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 17946026 - 17945613
Alignment:
| Q |
11 |
catcacaatcaaagggacatttacaggtcaaaaaagcaaatcaattttttggaactcgcaaatggctcgagaaaacaagtgcaaaagcaagacaaccttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17946026 |
catcacaatcaaagggacatttacaggtcaaaaaagcaaatcaattttttggaactcgcaaatggctcgagaaaacaagtgcaaaagcaagacaaccttt |
17945927 |
T |
|
| Q |
111 |
tggaattaacatatggtgggaacaaaaagaaagtgcaaaaccaaaacaaccttttggaactcacatattaactgacaaaccaactgaagaagaaatggcg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17945926 |
tggaattaacatatggtgggaacaaaaagaaagtgtaaaaccaaaacaaccttttggaactcacatattaattgacaaaccaactgaagaagaaatggca |
17945827 |
T |
|
| Q |
211 |
aaaccaaacgatcattttgggattcttgtatggactggtaaagcaagtcaatcttttcgaactcgaatatcaattgataatgtagctaagaaagaaaccg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17945826 |
aaaccaaacgatcattttgggattcttgtatggactggtaaagcaagtcaatcttttcgaactcatatatcaattgataatgtagctaagaaagaaaccg |
17945727 |
T |
|
| Q |
311 |
aaaaaataagtcaaacttctgtagcacataaattggatgaaaaagagacacacattcttcacagctattgtggaaacccatcggctataggagaagacaa |
410 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
17945726 |
aaaaaatcagtcaaacttctgtagcacataaattggatgaaaaagagacacacattcttcacagctactgtggaaacccatcggctataggagaagagaa |
17945627 |
T |
|
| Q |
411 |
acactgtgcatatt |
424 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17945626 |
acactgtgcatatt |
17945613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University