View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2578_low_11 (Length: 221)
Name: NF2578_low_11
Description: NF2578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2578_low_11 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 10190021 - 10190207
Alignment:
| Q |
35 |
tcaaaatagattaataaagttgtttaaaatttgacccaatttnnnnnnnncttaagacatccaaacatgtcctcaagatgattactgcaatgtttgcaaa |
134 |
Q |
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| T |
10190021 |
tcaaaatagattaataaagttgtttaaaatttgacccaatttaaaaaaaacttaagacatccaaacatgtcctcaagatgattactgcaatgtttgcaaa |
10190120 |
T |
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| Q |
135 |
gcgtgtaaaagaccatacaggaagaaaacgaacaaaagattcaataatgtaagaagtctaaatgaagtgaagtaaacaatacatatc |
221 |
Q |
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| T |
10190121 |
gcgtgtaaaagaccatacaggaagaaaacgaacaaaagattcaataatgtaagaagtctaaatgaagtgaagtaaacaatacatatc |
10190207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10182279 - 10182313
Alignment:
| Q |
1 |
atattcctaattaataagtattactaatttatttt |
35 |
Q |
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| T |
10182279 |
atattcctaattaataagtattactaatttatttt |
10182313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10187319 - 10187353
Alignment:
| Q |
1 |
atattcctaattaataagtattactaatttatttt |
35 |
Q |
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| T |
10187319 |
atattcctaattaataagtattactaatttatttt |
10187353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 19463606 - 19463473
Alignment:
| Q |
85 |
cttaagacatccaaacatgtcctcaagatgattactgcaatgtttgcaaagcgtgtaa-aagaccatacaggaagaaaacgaacaaaagattcaataatg |
183 |
Q |
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| T |
19463606 |
cttaagacatccaaacatgtcctcaagatgattactgcaatgtctgcaaagcgtgtaacaagaccattcaggaagaaaacgaacaaaaaaatcaataatg |
19463507 |
T |
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| Q |
184 |
taagaagtctaaatgaagtgaagtaaacaataca |
217 |
Q |
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| T |
19463506 |
taagaagtctaaatgaagtgaagtgaataataca |
19463473 |
T |
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